Pseudomonas sp. M47T1, PMM47T1_04824
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGTCGCCTGACTTCCCAATGGCAGGTATTCGCCAACTACACGTATATGCAGAGCCAGACGCTGAAGTCTGCCACCAACCGTGCGGCCGAAGGTCAGGC ACTGGCCAATACGCCGCCGCGCTCATTCAGCCTGTGGACCACCTACCAAATGCCAGGTGATTGGCGTGTGGGTTACGGCCTGCGCCATGCCAGCGAGCGA AACCTGCGCAATGACGAAACCCACAAGGCCGATGGCTACTGGGTGCACCAGGCCATGCTGGGCTACCAGGTGAGTGAGCAACTGGACCTGCAGTTGAACC TGGATAACCTGCTGGACACCCACTACGTCGAGCGGATACGGCAAGTGACCGGCAACGGCAAACGCTCTTCGTCCATAGAATATGGCGACGCCAGGTCGGC GGTGTTGTCAGCGGTTTATCGTTTCTGACCCGCCGTGGGGTGATTTACTGTACTATGGAGTACAAATAATATAAACGCCCCTCACTGAAGGTCGCCCACC
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| DNA Sequence for Gene |
>PMM47T1_04824
ATGTTGCGCCACGTCTTGCCCGCTGTCGTGTCCATGAGTCTGGTGCTGTTGCTTGCTGCCTGTGGCCAGGAGCAAGCCCCCCCGCCGCGGGTACGCCCGG CCATGGTGGTGCAGCCGCAACCGGCGGGTGCAGTGGTGGAAAGCTACCCCGGCGAGGTGCGCGCGCGGTTCGAGCCGGACCTGGCCTTTCGCGTGGGCGG CAAAGTGATCAAGCGGCTGGTGGATGAGGGCGACCGGGTCAAGGCCGACCAGCCACTGGCCGAACTCGACCCCCAGGACACCCGCCTGCAACTGGAGGCC AGCCGGGCCCAGGTGGCGGCGGCCGAAGCCAACCTGAACATGGTGCGTGCCGAGCGTGAGCGCTATCAGAAACTGGTGGACCGCGGCATGGTCAGCCGTT CGCTGTTCGACAACACCGAAAATGCCTACCGCGCGGGCCTGGCACGGCTGACCCAGTTGAAGGCCGAGAACCAGGTGGCGGGCAACCAGGCCGGCTATGC GGTATTGCGTGCGCCCCAGGCGGGTGTCATCGCTCGCCGGCAACTGGAAGTGGGCCAGGTGGTGGCCGCCGGCCAGACCGTGCTCACCCTGGCCGCCGAT GGCGAGCGCGAAGTGCTGATCAGCCTGCCGGAGCAGGGCTTCACCCGTTTTCACCTGGGCCAGCCGGTGACCGTGGAACTGTGGGGGCAGCCGCAAACCC AGATACCCGGGCGCCTTCGTGAACTGTCTCCTGCCGCCGACCCTCGGTCGCGAACCTTCGCTGCGCGTGTGGCCTTCGACTCCGACAAGGTCGCCGCCGA GTTGGGGCAAAGTGCGCGGGTGAACGTCGAGGCTGACGGGCCGGTGCCGTTGTCGGTGCCCCTGGCAGCGCTGAGCGCGGATAACGGCCAGGCCTATGTA TGGCGCGTAGGGCCGGGCAATGTGCTGCAACGGGCCGTGGTCAGGGTTGGTCCTTACGGCGAGGATAGCGTGCCGGTGCTCGAAGGGTTGCAAACCGGCG ACTGGGTGGTGGCGGCCGGCGTGCATGTGTTGCACGAGGGCGAGCAGGTGCGCCCGGTGGATCGCGGCAACCGCGTGGTGAAACCGGCGGACAAGGAGTA G
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCATGCGTTTCAACCTGTCCGAGTGGGCGCTCAACAACCGCCAGATTGTACTGTTCCTGATGCTGCTGCTGGCATTGGTGGGCACGCTGTCGTACACC AAGTTGGGGCAAAGCGAAGACCCGCCGTTCACCTTCAAGGCCATGGTCATCCGCACCTTGTGGCCCGGCGCCAGCGCCGAGGAAGTGGGGCGCCAGGTGA CCGAGCGCATCGAGAAGAAACTCATGGAAACCGGTGAGTACGAGCGCATCGTCTCGTTCTCACGGCCCGGTGAATCCCAGGTCACGTTCATGGCCCGCGA CTCCATGCCATCCTCCGAGATTCCCGAGCTCTGGTACCAGGTGCGCAAGAAAATCAGCGACATTCGCCAGACCTTGCCGCCGGACGTGCAGGGCCCGTTC TTCAATGACGAATTCGGCACTACCTTCGGTAACCTCTACGCCCTGAGCGGCGACGGCTTCGATTACGCGGTGCTGAAGGACTATGCCGAGCGCATCCAGA
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| Amino Acid Sequence |
>RND transporter
MLRHVLPAVVSMSLVLLLAACGQEQAPPPRVRPAMVVQPQPAGAVVESYPGEVRARFEPDLAFRVGGKVIKRLVDEGDRVKADQPLAELDPQDTRLQLEA SRAQVAAAEANLNMVRAERERYQKLVDRGMVSRSLFDNTENAYRAGLARLTQLKAENQVAGNQAGYAVLRAPQAGVIARRQLEVGQVVAAGQTVLTLAAD GEREVLISLPEQGFTRFHLGQPVTVELWGQPQTQIPGRLRELSPAADPRSRTFAARVAFDSDKVAAELGQSARVNVEADGPVPLSVPLAALSADNGQAYV WRVGPGNVLQRAVVRVGPYGEDSVPVLEGLQTGDWVVAAGVHVLHEGEQVRPVDRGNRVVKPADKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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