Pseudomonas sp. M47T1, PMM47T1_02304
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. M47T1 contig02, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGATTCGGGCTCAGGTTTTCGGAGGAAATCGGGCATCATCCACATGGATGGCCTTTGCGCAAGGACTGACCGGCAAATGACAGATGAGTTCATAAATCA ATTGCAACAATTTGGTGACAATGTGCCCATCGATGCGGCGGCAGAACGCCGAACGGCGTTGTACACGGTGCTTTCCCAAGTGCCTGAAGGCAAGGTCGTG ACCTACGGCCAACTGGCCGACATGGCCGGCCTGGTGCGCACTGCGCGCTGGGTGGGGCGCACCTTGAGCCAGTTGCCGGAGGGCAGCCAACTGCCTTGGC ACCGGGTTATAGGTGCCGGTGGTCGGATAAGTCTGGCTGCCGGAACCGTCGGCGGTGAAGAGCAGCGGGCGCGTTTACGCGCCGAAGGCGTTAATTTCAT GAATAATCGCGTGGATATCCGTCGCCATGGCTGGCGCCCCATGGACCCTAACGGTTAGAGTGCGCGCTTTGTTTTCGTAAACTGAGGCAGATTCCAGCCC
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| DNA Sequence for Gene |
>PMM47T1_02304
ATGCCCCGTAAAACCTGGCGCGCCGCGCTCGCCGCATATGCCAGCCCTTCGACGCTTGTCCTGTTGCTGCTCGGTTTCGCCGCCGGCCTTCCGTACATGC TGGTGTTCTCCACCCTCTCCGTCTGGCTGCGTGAAGCCGGCGTTGCCCGCGAGACCATCGGCTATGCCAGCCTGATCGGCCTGGCCTATGCCTTCAAATG GGTATGGTCGCCCCTGCTGGACCAATGGCGCCTGCCATTCCTGGCCAGGATGGGCCGTCGCCGCTCCTGGTTGGTGCTGGCCCAGTCGCTGGTGATCATC GGCCTGATCGGCATGAGTTTCTGCGACCCGCAAAAGCACCTGTCCTGGCTGATTGCCATTGCGGTGATGGTGGCTTTCGCCTCGGCGACACAAGACATCG CCGTAGACGCCTATCGCCTGGAAATAGCCGAAGACAACACCCAGGCCGCCCTGGCCGCCAGCTACATGGCCGGCTACCGCATCGCCGCGCTGCTGGCCAC CGCCGGCGCGCTGTTCTTCGCCGAGGCCTTCGGTTCCACCGGCTATGCCTACATGCACAAGGCCTGGGCCGGTACCTACATGCTGTTCGGGGTGCTGATG GTGCCCGCGCTGATCACCACACTGGTCATGCGCGAGCCGGCCGTGCCACTGCGCACCCAACTGTCGGCTGGGCGCTACAAGTTCGGCCATCAACTGATGT CGGTGTTCGTGCTGATCATTCTGCTGATCTCGGTGCCGGCAATGTTCACCCAGTTGTACAACACTGACTTCGCCAGCGTGATCTTCCACGGCGAAAGCCT GGTGGACCTGCTGCTGACCGACCGCGCCTTCCTGCGCGCCATTCTCTACATCATCCTCACTGCGCTGTGCCTGTCGTCCATGGGCCGTCGAGGCCTGGCG CCAGTACTGACCCCGGTCAGCGACTTCGTGGTGCGCTACCGTTGGCAGGCGTTGCTGCTGCTGGGCCTGATTGCCACGTACCGCATGTCCGACACGGTCA TGGGCGTCATGGCCAACGTGTTCTACATCGATCAGGGCTTCACCAAGGACCAGATCGCCAGCGTCAGCAAGATCTTTGGCCTGGTGATGACATTGCTGGG GGCGGGGGTGGGCGGCCTGTTGATTGTGCGGTTCGGCATCCTGCCGATCCTGTTCGTCGGCGGCGTGGCGTCGGCGGGCACCAACCTGCTGTTCCTGATG CTGGCGGACATGGGCCCGAACCTGAAGATGCTGATCGTGACCATCTCGCTGGACAACTTCAGTTCAGGCATGGCCACCTCGGCGTTCGTGGCCTACCTGT CGAGCCTTACCAACCTGAAGTTCTCGGCCACGCAATACGCGCTGCTCAGCTCCATCATGCTGCTGTTGCCGCGCCTGATCGGTGGTTATTCAGGGGTGAT GGTGGAGAAGTTCGGCTACCACAACTTCTTCCTGATCACCGCTGTGCTGGGCGTGCCCACGCTGTTCCTGATTGCCTTGCACTGGCATCAGGAAAGCCGT GGCAACCGCATGGAAGCGGTAGAACAAGAGACTGCAGCAGACAAATCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGTTACTGCTCCTGTGGGCGCGGGCTCTGCCCGCGAAACAGACAACGCAGGGTGACAGGCACTGCGCGGTGCTCTTTTCGCGGGTAGAACCCGCTCCCA CAAGACCGTTGGGGCCCAAACCGCCGGTGTCCGTAAAAAAGGGAGATCATTCGATCTCCCTTTTTTTGTTTACTGCGCGGGTTCCGACACCACGCGCACC ACGCGCTGCGGGAACGGGATGTCGATGTTCGCGGCACGCAACCGGTCGCGGATCTCGGCGTTGATCATGTTGGTGACCCCGCCCATGTCCGACGTATTCA CCCACATGCGTAACGACACAGTGATGGCGCTGTCGCCCAGCGCGGCAACCACGGCTTCCGGTGCCGGGCTTTCCAGCACGCGCGGATCCTTGGCCAGGTC CAGGAGAATTTCCCGGGCCTTCTGCAGGTCGGCATCGTAGTCCACGCCAATGTCGTAGGTGATCTTGCGCGTGGGCTGACGGTTGGTGTTGGTGATGATG
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| Amino Acid Sequence |
>permease
MPRKTWRAALAAYASPSTLVLLLLGFAAGLPYMLVFSTLSVWLREAGVARETIGYASLIGLAYAFKWVWSPLLDQWRLPFLARMGRRRSWLVLAQSLVII GLIGMSFCDPQKHLSWLIAIAVMVAFASATQDIAVDAYRLEIAEDNTQAALAASYMAGYRIAALLATAGALFFAEAFGSTGYAYMHKAWAGTYMLFGVLM VPALITTLVMREPAVPLRTQLSAGRYKFGHQLMSVFVLIILLISVPAMFTQLYNTDFASVIFHGESLVDLLLTDRAFLRAILYIILTALCLSSMGRRGLA PVLTPVSDFVVRYRWQALLLLGLIATYRMSDTVMGVMANVFYIDQGFTKDQIASVSKIFGLVMTLLGAGVGGLLIVRFGILPILFVGGVASAGTNLLFLM LADMGPNLKMLIVTISLDNFSSGMATSAFVAYLSSLTNLKFSATQYALLSSIMLLLPRLIGGYSGVMVEKFGYHNFFLITAVLGVPTLFLIALHWHQESR GNRMEAVEQETAADKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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