Pseudomonas sp. M47T1, PMM47T1_01825

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. M47T1 contig01, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTGCCCCGCCGCGCACGCTCTATGAAGAGCCGAAAAACACCTTCGTGGCCAACTTCATCGGCGAGAACAACCGCCTCAACGGCCGCCTGATCACCCAGA ACGGGGACCGCTGCATTGTCGGCCTGGAGCGTGGCGAGAAAATCGAGGCGCTGGCAGTGAATGTCGGTGAGCCGGGCGACCCGGTAACCCTGTCGATTCG CCCGGAACGGGTGTTCCTCAATGGCCATAGCGAGCAATGCAGCAACCGATTCTCTGGCCGGGTTGCCGAGTTCATCTACCTGGGCGACCACGTGCGCGTG CGTCTGGAGGTGTGCGGCAAGTCGGATTTCTTCGTGAAGCAGCCAATTGCCGAGCTGGATCCGGCGTTGGCCGTGGGCGATGTGGTACCGCTCGGCTGGC AGGTCGAGCACGCGCGTGCGCTGGACCCGTTGTTAGTCGACTAGAGGCGAGCCGAATCGCCCATAGCTACACCAACCCTGCACTGTGGAGAGAAGAAGAA
DNA Sequence for Gene
>PMM47T1_01825
ATGCTCAAGCACTTGAAGTTCACCGCCCTGGCCCTGGGCCTGATGGGCGCAACCCAGGCCATGGCGGCGGACCTGACCCTGGTTTCCTTTGGCGGCGCCA ACAAGGCGGCCCAGGAGAAGGCGTTTTACCAACCGTGGGAAAAGACTGGCCAGGGCAAGATCATCGCTGGCGAATACAACGGCGAGATGGCAAAAGTCAA AGCCATGGTCGACACCAAGAGCGTGTCCTGGGACCTGGTAGAGGTGGAGTCGCCGGAACTGGCCCGTGGCTGTGATGAAGGCATGTTTGAAAAGATCGAT CCGGCCCTGTTCGGCAAGAAGTCCGATTATGTGGATGGCGCCATCCAGGAATGCGGCGTGGGCTTCTTCGTATGGTCCACCGTGCTGGCCTACAACGCCG ACAAGCTCAAGACCGCGCCCACCAGTTGGGCTGACTTCTGGGACGTGAAGAAATTCCCGGGCAAGCGTGGCCTGCGCAAGGGTGCCAAGTACACCCTGGA ATTCGCCCTGATGGCCGACGGCGTCGCGCCCAAGGACGTCTACAAAGTGTTGGGCACCAAGGCCGGCCAGGACCGGGCCTTCAAGAAGCTCGACGAGCTC AAGCCAAGCATCCAGTGGTGGGAAGCCGGCGCCCAGCCGCCGCAGTACCTGGCCTCGGGTGACGTGGTCATGAGCTCGGCCTACAACGGTCGCATCGCCG CCGTGCAGAAAGAGAGCAACCTGAAAGTGGTGTGGAACGGCGGCGTCTACGACTTCGACGCTTGGGCCATTCCCAAGGGCGCGAAGAACGCTGAGGAAGC GAAGAAGTTCATCGCCTACACCCTCCTGCCTGAACAGCAGAAGGTCTTCTCGGAAAACATCGCTTACGGCCCGGCCAACAGCCAGGCGGTACCGTTGTTG GACAAGGGCATTCTCAAGGACATGCCTACCACGCCGGAAAACATTGCCAATCAGGTGCAGATCAATGTCGGCTTCTGGGCTGACAACGGTGAGCAATTGG AACAGCGCTTCAACGCCTGGGCTGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCACGCAGGTGGCGCGTCATCCGACGGTGGCGCGCCTTCAGTTCAAAGATTCGCGGAGTTGACCATGGCCCTTGCAGTGCCCGTAAAAGAGGTCGCCA GCCTTACCCTGAAACAGCGCCTGGCCCGGGCCGAACGGCTCAACCGCCTTAAAGCGCAGGCCCTGATCGCGCCGCTGGTGCTGTTCCTGCTGTTGGTGTT CCTGGTGCCTATCGCCGTGCTGTTGTACAAGAGCGTCGGCAACCCGGAGGTGGTCCAGGGCCTGCCGCGTACCGTTGTTGCCGTGAAGGCCTGGGATGGC AAGAGCCTGCCCGATGAAGCGACCTACAAGGCACTCAGTGAGGACCTGGTAGAGGCGCGCAAGCAGCAGACCCTGGGCGACCTGTCCAAGCGCCTGAACA TGGAACTGGCCGGCTACCGCAGCCTGCTGTCGAAAACCGCCCGGGCGCTGCCGTTCACGCCTGAGCCTGGCTCCTATAAGGAGGCCCTGCAAAACCTCGA
Amino Acid Sequence
>spermidine/putrescine ABC transporter substrate-binding protein
MLKHLKFTALALGLMGATQAMAADLTLVSFGGANKAAQEKAFYQPWEKTGQGKIIAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELARGCDEGMFEKID PALFGKKSDYVDGAIQECGVGFFVWSTVLAYNADKLKTAPTSWADFWDVKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLGTKAGQDRAFKKLDEL KPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGVYDFDAWAIPKGAKNAEEAKKFIAYTLLPEQQKVFSENIAYGPANSQAVPLL DKGILKDMPTTPENIANQVQINVGFWADNGEQLEQRFNAWAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site