Pseudomonas sp. M47T1, PMM47T1_00970

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.120.160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1052 1149 1.4E-8
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1664 1796 2.35E-22
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 757 887 2.1E-13
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1832 1943 1.0E-27
CDD cd16916 HATPase_CheA-like - - 1486 1661 8.37948E-78
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1832 1943 1.55093E-32
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1191 1312 7.59E-26
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 101 3.8E-5
Gene3D G3DSA:3.40.50.2300 - - - 1832 1951 4.1E-42
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1648 1661 3.3E-12
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1480 1661 6.94E-38
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1193 1285 9.0E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 759 818 9.9648E-5
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 627 716 1.47125E-7
Coils Coil Coil - - 1109 1129 -
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1189 1314 7.7E-28
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 629 750 0.0
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 14 128 2.1E-6
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 627 755 4.9E-27
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 758 879 8.37E-15
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 627 749 2.06E-24
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1479 1663 4.8E-60
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 129 1.14E-18
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1737 1798 6.6E-20
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 629 718 9.7E-13
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1055 1154 6.3E-12
SMART SM00260 chew_2 IPR002545 CheW-like domain 1656 1800 3.2E-24
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1052 1150 1.32023E-12
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1829 1948 1.01E-37
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1527 1662 1.3E-15
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1624 1642 3.3E-12
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1339 1478 1.4E-8
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1477 1662 3.1E-52
Coils Coil Coil - - 163 183 -
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 898 1016 9.7E-9
Coils Coil Coil - - 1370 1397 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 432 556 2.24E-13
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1669 1801 6.1E-21
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1523 1664 3.4E-23
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1830 1943 2.7E-36
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 761 846 5.8E-8
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1191 1289 6.54622E-13
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1191 1288 9.1E-9
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1052 1174 6.8E-27
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 627 724 9.6E-6
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1050 1182 1.2E-28
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1568 1582 3.3E-12
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 899 1012 7.06E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.