Pseudomonas alcaliphila 34, D567_RS0123280 (fadH)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alcaliphila 34 c20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATATGTTCGGGCAGCACGACGACGGTGCGTTCGTTGAGCATGCCTTGGTCACGGGCGTGATCCAGGTAGGCGGCCAGCTTCAGGCGCAGTCGCGCGAGG CTCTGGTAGTCGGCGGCGAACAGTTCCGGCTGGATGCCCAGCAGGTTGCCGCGTGTGCCGGGCTCACCAATATCGAGCGCGACCTGGCTGCGCAGGTCGG ACAGGTAATGGCTGCTGGGGCGCTGCGCGATCCAGTGGGCGTAGCTGCCAAGACCGGTCAGCAGTGCGAGCGCGAGCAGAAGGGTGATCAGTAGGCGCAT TGGTTTTTTCAGTTTGGTTGCGGTGCAGGTTAGGTCGGTCGAGCCGTGCTGCCAACCTCTATTGCTAGTTTTGATCATTATCTTGTTAGTTTTGATCATT GAGCATGGCTGGCAGCCTATTTATCGTCTGGCTCCATAACCGACCGCGTGACCATGAGACCGCGGCAATCCGTGAACTGCACCGCGATGTGGAGAATTCC
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| DNA Sequence for Gene |
>D567_RS0123280
|fadH
ATGACTGCTCGTTACCCGCACCTGCTGGCCCCGCTCGACCTCGGCTTCACCACGCTGAGCAACCGTACGCTGATGGGCTCCATGCACACTGGCCTGGAAG AGAAGCCGGGCGGCTTCGAGCGCATGGCGGCCTATTTCGCCGAGCGCGCCCGTGGCGGCGTCGGCCTGATGGTCACCGGCGGCATCGGCCCGAACGAGGA GGGCGGCGTGTATTCCGGCGCTGCCAAGCTGAGCACGGTGGAAGAGGCCGAGAAGCACAAGATCGTCACCCAGGCCGTGCACGAGGCGGGCGGCAAGATC TGCATGCAGATCCTGCACGCCGGGCGTTATGCCTATAGCCCCAAGTCCGTGGCGCCGAGCGCCATCCAGGCACCGATCAACCCGTTCAAGCCGCGCGAGC TGGACGAAGAGGGCATCGAGAAGCAGATCGCCGACTTCGTCAATTGCGCGGCGCTGGCCCAGCAGGCCGGTTATGACGGTGTCGAGGTGATGGGCTCGGA AGGTTATTTCATCAACCAGTTCCTGGTCGCCCACACCAACCATCGTACCGACCGCTGGGGCGGCAGCTACGAGAACCGCATGCGCCTGCCGGTGGAGATC GTCCGCCGCGTGCGCGAGGCGGTCGGCCCGAACTTCATCATCATCTATCGCCTGTCGATGCTCGATCTGGTCGAGGGTGGCAGCACCTGGGACGAGATCG TGCTGCTGGCCAAGGCCATCGAGCAGGCCGGCGCCACCCTGATCAACACCGGTATCGGCTGGCACGAGGCGCGTATCCCGACCATCGCCACCAAGGTGCC GCGTGCGGCCTTCACCAAGGTCACCGCCAAGCTCAAGGGTGAGGTGTCGATTCCGCTGATCACCACCAACCGCATCAACACCCCGGAAGTCGCCGAGCAG GTGCTGGCCGAGGGCGATGCCGACATGGTGTCGATGGCGCGCCCGTTCCTTGCCGACCCAGACTTCGTCAACAAGGCCGCCGAAGGCCGTAGCGATGAGA TCAACACCTGCATCGGTTGTAACCAGGCCTGCCTGGATCACACTTTCGGCGGCAAGCTGACCAGTTGCCTGGTCAACCCGCGCGCCTGCCATGAGACCGA GCTGAACTACATCCCCACCGCCGCGGTGAAGAAGATCGCCGTGGTCGGTGCCGGCCCGGCTGGGCTGGCGGCTTCTACCGTCGCCGCCGAGCGCGGCCAT GCTGTGACCCTGTTCGACGCGGCTGGCGAGATCGGTGGCCAGTTCAACGTGGCCAAGCGCGTGCCGGGCAAGGAAGAGTTCTTCGAGACCCTGCGCTACT TCAAGCGCAAGCTGGAAACCACTGGCGTCGACGTACGCCTGAACACCCGCGTGTCGGTGGACGATCTGCTCAAGGGGGGCTTCGACGAAATCATCCTGGC CACCGGTATTGCCCCGCGCACCCCGGATATTCCGGGTATCGAGCATGCCAAGGTGATCAGCTACCTGGACGCGATTCTCGAGCGCAAGCCGGTCGGGCAT AAGGTCGCTGTCATCGGTGCCGGCGGTATCGGTTTCGACGTGTCCGAATTCATCACGCACCAAGGCAAGGCCACCAGCCTCGACCGTGACGAGTTCTGGA AAGAGTGGGGCATCGACACGGCGCTGGAAGCCCGTGGTGGCGTGGCGGGTGTCAAGGCGCATCCGCACCCGGCGGCGCGTCAGGTATTCCTGCTGCAGCG CAAGAAGTCCAAGGTCGGCGATGGCCTGGGCAAGACCACCGGCTGGATTCACCGCACCGGCCTGAAGAACAAGAACGTGCAGATGCTCAACAGCGTCGAG TACGTGCAGATCGACGATGCCGGCCTGCATATCCGCATTGCTGGTGGCGAGCAGCAGGTGCTGCCAGTCGATACCGTGATCGTTTGCGCTGGCCAGGACC CGCTGCGTGAGCTGCAGGAAGGTCTGGAAAATGCCGGCCAGCGTGTGCACCTGGTCGGCGGTGCGGATGTCGCCGCCGAGCTTGACGCCAAGCGGGCGAT CAACCAGGGCTCGCGCCTGGCGGCCGAACTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAACCGACGCCCCGCCTTGTGCGGGGCGTCTGCTTAGTGGCTGAGAATAACAAGGAGACGCCCATGTCGCTCGATGCTCAACTCAACCCATCCGCCGC AGCCAGCCTGGCACGCTGGCACCAGTTCGTCGCCGCCAAGGACCTGAGTGCCTTGCCCGAGTTGCTGCACCCTCAGGCGGTGTTCCGTTCGCCCATGGCG CACACCCCTTATCCGGGCGCGCAGGTGGTCAATCTGATCCTCAATACCGTGCTCAAGGTGTTCGAAGATTTTGCCTATCACCGCGAACTGGCTACTGCCG ATGGCCTCAGTGTGGTGCTGGAGTTTTCCGCGAAGGTTGGCGGGCGCGAGTTGAAGGGCATCGACATGATTCGCTTCGACGAGTCGGGACGAATCGTCGA GTTCGAGGTGATGGTGCGCCCGATGAGCGGACTGCAGGCGCTCGGCGCGGAAATGGCGCAGCGCCTGGCACCCTTTCTCGCAGCCGCCAAGGGCTGAGGG
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| Amino Acid Sequence |
>2,4-dienoyl-CoA reductase
MTARYPHLLAPLDLGFTTLSNRTLMGSMHTGLEEKPGGFERMAAYFAERARGGVGLMVTGGIGPNEEGGVYSGAAKLSTVEEAEKHKIVTQAVHEAGGKI CMQILHAGRYAYSPKSVAPSAIQAPINPFKPRELDEEGIEKQIADFVNCAALAQQAGYDGVEVMGSEGYFINQFLVAHTNHRTDRWGGSYENRMRLPVEI VRRVREAVGPNFIIIYRLSMLDLVEGGSTWDEIVLLAKAIEQAGATLINTGIGWHEARIPTIATKVPRAAFTKVTAKLKGEVSIPLITTNRINTPEVAEQ VLAEGDADMVSMARPFLADPDFVNKAAEGRSDEINTCIGCNQACLDHTFGGKLTSCLVNPRACHETELNYIPTAAVKKIAVVGAGPAGLAASTVAAERGH AVTLFDAAGEIGGQFNVAKRVPGKEEFFETLRYFKRKLETTGVDVRLNTRVSVDDLLKGGFDEIILATGIAPRTPDIPGIEHAKVISYLDAILERKPVGH KVAVIGAGGIGFDVSEFITHQGKATSLDRDEFWKEWGIDTALEARGGVAGVKAHPHPAARQVFLLQRKKSKVGDGLGKTTGWIHRTGLKNKNVQMLNSVE YVQIDDAGLHIRIAGGEQQVLPVDTVIVCAGQDPLRELQEGLENAGQRVHLVGGADVAAELDAKRAINQGSRLAAEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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