Strain | Pseudomonas alcaliphila 34 III, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGATCGACGCGCCAGTCGAACTGGCCGGCTTCGATCTCACCCTGGATCTGCTTGAGCCCATCAATGATGGCGTCACGCTCGGCATCGCTGAGGACGCCGA CCTTGGCCAGCATGCTGGCGTGGGCGATGGAGCCCATGATGTCGTGGCGGTACAGGCGCTTGTCGAATTCGACCGAGGCGGTGAAGCGGGCGACGAAGGC GTCGACAGGTTCGCTGAAGCGGCCGCCCCAGGATTGGTTGGTTTTTTCGCTGCTCATGGCACTTGCTCTGGTTCGGGCTCTGGATCGGGCGGCCGCGTCG GCGGCCGGCATGGCGGACAAAGTGCGTCGATAATAACAGGGTCGGCAGGCGTTTCGCCGGGGCGCGTTCGCCGTTGGGCGTTCGATGGCGTTGTCGGCTG CTTCACAATTTTGCCCTGAAGGCGGCATTTCGGTGCTTTATTTTGTCCGGCTGGGGCCGTCTGGCTTGCCGGCTCGCAGGGCGACAAGGAAACTGCGTCG
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DNA Sequence for Gene |
>D567_RS0119385
ATGCACAGACAATCCTCTACCAAGAACAAATACAACGCCGCTATCGACGACTTCTTCGTCCCGGAACTGTGTCAGCCCGAAGCGCTGCTGAGCATGGTGC TGTTGGCCGAGTTGCTGGTATTGGTATTGGTGCTCGCCGAACCGATGACGCCGGGGTTCGACTGGGTACGCCTGGCCCTGACTTCACTGTTCGTGCAGTG GATCGTGCTGCTGTCGGCTGCTGTGCTCTGCCGCTTGCGGCCGCTGCTGGCACGTCTGCGTCCCGCGTTGGCTGGGGGGCTGTGCTGCGCGCTGGTGGTG CTGCTGACCCTGGGTTGTACGGCGGTGGCCGACTATTACGAGCTGGGTGGGCCGCTGCCGCGCAGTGGTGAAGTGAATCTTTATCTGCGTCATGCGTTGA TCAGCCTGATCATGTCCGCACTGCTGCTACGCTATTTCTATCTGCAGAGCCAATGGCGTCGGCAGGAGCAGGCCGAGCTGCGTGCGCGGATCGAATCGTT ACAAGCGCGGATTCGCCCGCACTTTCTGTTCAACAGCCTCAACAGCATCGCCAGCCTGGTCACGCTCGATCCTTACAAGGCCGAGCAGGCGGTGCTGGAT CTGTCCGATCTGTTTCGCGCCAGCCTGGCCAAACCTGGCACGCTGGTGCCGTGGAAGGAGGAACTGGAACTGGCGAAACGATATCTATCGATCGAGCACT ATCGGCTCGGCGAGCGACTACAGTTGCAGTGGGAGGTAGAAGGTGTGCCGGAGGATCTGCCGATTCCCCAGCTGACCCTGCAGCCTCTGTTGGAGAATGC GCTGATCTATGGCATCGCGCCGCGTATCGAAGGCGGCCTGGTGCGGGTCGAGGCGGATTACCAGGATGGTGTGTTCAGCTTGTGTGTCAGCAATCCGTAT GAAGAGCGGGGCGAGCAGCATCCGTCACGGGGAACGCAGCAAGCGCTGAGTAATATCGATGCGCGCCTGGCGGCACTTTTTGGGCCGCGCGCGAGTCTCA GCGTGGAGCGCCGTGACGGCCGTCACTACAGCTGTCTACGCTATCCTTGTGCGAGACTCACGCAGGAAGCCAGAGCAATATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ATGTCCTGATCGTCGATGACGAACCCCTTGCCCGCGAGCGCCTGAGCCGCATGGTCGGTGAGCTCGAGGGTTACCGGGTCTTGGAGCCCGCTGCCAGCAA TGGCGAGGAAGCCCTGACCCTGATTGATAGCCTCAAGCCGGATGTGGTCCTGCTGGATATCCGCATGCCCGGCCTCGACGGCCTGCAGGTGGCTGCCAAA TTGTGCGAGCGCGAAGCGCCGCCAGCGGTGATCTTTTGCACGGCGCATGATGAGTTCGCTCTGGAAGCCTTCCAGGTCAGTGCAGTGGGCTATCTGGTCA AACCGGTGCGGCCTGAGAGCCTGAGCGAAGCGCTGAAAAAGGCCGAGCGGCCCAATCGTGTGCAGTTGGCCGCCCTGACTCGTCCCGCAGCGGAGACTGG CGGTGGCCCGCGTACCCATATCAGTGCCCGTACCCGCAAGGGCATCGAGCTGATTCCGCTGGATCACGTGGTCTACTTCATCGCCGACCACAAATACGTC
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Amino Acid Sequence |
>alginate O-acetyltransferase
MHRQSSTKNKYNAAIDDFFVPELCQPEALLSMVLLAELLVLVLVLAEPMTPGFDWVRLALTSLFVQWIVLLSAAVLCRLRPLLARLRPALAGGLCCALVV LLTLGCTAVADYYELGGPLPRSGEVNLYLRHALISLIMSALLLRYFYLQSQWRRQEQAELRARIESLQARIRPHFLFNSLNSIASLVTLDPYKAEQAVLD LSDLFRASLAKPGTLVPWKEELELAKRYLSIEHYRLGERLQLQWEVEGVPEDLPIPQLTLQPLLENALIYGIAPRIEGGLVRVEADYQDGVFSLCVSNPY EERGEQHPSRGTQQALSNIDARLAALFGPRASLSVERRDGRHYSCLRYPCARLTQEARAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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