Pseudomonas alcaliphila 34, D567_RS0119235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alcaliphila 34 III, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCACTGCCCTTGAGCAGGGTGCCGACGCGCTCTTTCATCTCACGCGCGGCCTTGTTGGTGAAGGTCATGGCGACGATGTGCTGGGCGCGGATGCCGCA GTTCTGCACCAGGTGGGCGATCTTGCGCGTGATCACGCTGGTCTTGCCGGAACCGGCACCGGCGAGCACCAGAAGCGGGCCGCCGACGTAGTTCACGGCC TCTTGTTGCCGGGGGTTCAGTCGGGACATGGGATCGTTCGCAGAAAAAGGGCCGCGCATTTTAACAGGCCTGGCGACTTCTGCCGCGACCGTCCGGAACT GTGGCCTAGCGCACGAAATTGCATAGCCATGCACTTGGTTAATCACTTTATTCCAGTACTCTGGTCCCACTTGTCGGTTTACTGGCTATACCTCAGGATC TGCACTACCTTTCGCACGGATGTGATTGATTAGACGCCGATTACGGCGCGTTAAGGCGACGCGATTCGCCATCATTCTTGTGGTCATTGGGGGAGGTTGC
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| DNA Sequence for Gene |
>D567_RS0119235
TTGTCCACGCTCGTCGAACCCTTGCGGTTGGTCCTGTTGGCGGAAACGCCGGACTGGGCCGAATTGTTGCGCGAGCAGTTGAGCGCCCTGGGCAGCCCAT CCCCGCTGATTACCGCGCCGTCATGGGAAGCGGCCAGCAACCTGTTCGATGATCACGCCAGCGGTCTGCTGCTGAGTACCCCGGATCGTCTTCCCGAACC CCATCAGTGCCCCTTGCCCATCGTCCTGCTGCTCGACGAGGAGCCAGTCGAAGAACCTGCCGGTGTCAGCGACTGGCTGGTGCGCGGCAGCCTCAACCTC GACGTGCTGCGCCGTTGCCTGCGCTACGTGCGCGAACAGGGCAACCTCAAGCACACCCTGCAGCGCCTGGCCGAACAGGACCCCCTGACCGGCATCGCCA ATCGCCAGGGGTTCCAGACTCTGCTCGCGGCGCGCCTGGCCGAGTGTGGCGGCCGTGGCCTGGTGCTGGGTCACCTCGATCTGGACAACTTCCGTCACGC CAACGATGCCCTCGGCTACCAGGCCGGCGACCGCCTGATCCTGCAGGTGGTGGCGCGGCTCAAGGGGCTGCTGCAGCCCTGCGATCAGATCGCGCGTCTG GGCAGCGACGAATTCGCACTGTTGCTCGATGCACGCCGCGATCCGCAGCGCGTGGAGCACCTCGCCGAGCGCGTCACCGAAGTATTGGGTGAGCCTTACT GGGTGGATGGCGAGAGTCTGCTGATCGGTTGCAGCCTTGGCCTGGCGCATGCCCGTGCGGGCGAGGGCGCCGACCCGCTGCTGTGGCACGCGCATATCGC CATGCAACAGGCCAAGAATCAGCAAGGCTGCGTGTTTCATGTCTATGATGAACGCCTGAACCGCAGCGCACGCAGCCAGGCCGATCTGGAAGGCGAGCTG CGCCGCGCTCTACGCCGTGACGAACTGGAGCTGCATTATCAGCCCCGCCTGTGCCTGAAGAGCGGGCGCATCGTCGGCCTGGAGGCGCTGGTGCGCTGGC AGCACAGCGAGCGTGGGCTGCTTTCGCCCAATGAATTCGTACCGCTGGCCGAAGAAACCGGGTTGATTGTACCGCTCGGTTACTGGGTCATCTCCCGTGC CCTGCGCGATATGCAGTGGCTGCGTGGGCGCGGCCTGCCGGCACTGCATATGGCGGTCAACCTGTCGTTCCGCCAGTTTCAGGACAGCCAGTTGCTGCCG ACCCTCAGCCGCCTGATCGAAGAACGCGGGGTCGATGCGCAGTGGCTGGAGTTCGAGTTGACCGAAACCGCGGTGATGCGCCGCAGCGATCAGGTGCAGC AGACCATGCTGGCGCTTGGGCGGCTCGGCGTGCGTTTCTCGTTGGACGACTTCGGCACCGGCTTCTCGTCTTTCGTTCATCTCAACAACCTGCCGATCAC CCTGCTGAAGATCGACAAGAGCTTTGTCGGTGGCATGGGCGAGCGTGCCGAGAATCGCCAATTGGTGCGGGCGATGATCAATCTGGCGCACAACCTCAAT CTCGAGGTGGTGGCCGAAGGGGTGGAGAACATCGAGCAGCTCGACATGCTGCGCCAGTTTGGTTGCGATCAGGTACAGGGCTACCTGATCAGCAAGGCCA TACCTCTGGCGGAGTTGGCACGCTTTCTGGTGTTCGGCCTGCGCCAGCCGCTGCTCGGCGGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTGGCCCGGACGCAAGCCAGGGAATATGCCGCACACGACCCCGGCTTGCATGCGGGCTACGACAGGCAGGTCTCGCCTTCTACCGCAAGTGGCCGCTG CAGGCGCGCAGTTTTCCACTGGAAGCCCAACACCAGACCGCTCGCCGTTACCGCCAGGCCGGCAGCCAGGCCCCACCAGACGCCCTGTGCGCCCCAGCCA AGGGCGAAGGCGAACAGCCAGACCAGCGGTGCGCCCACGCACCAGTAGCCAGTCAGACCGATCAGCAGGGTGGTGCGGCCGTCGTTCAGCCCGCGGATCG CGCCCATGGCGATGCTCTGCAAACCATCGAACAGCTCGAACCAGGCGGCGATCGCCAGCAGGCTGACCGCGAGGGTGACGATATTGGCGAACGCCGGGTC GTGGCGGTCGAGGAACAGACCGATGATCCACTCCGGCAGCAGCCAGAACAGCAGGGCAAACAGCAGCATCAACGCCGCTCCCAGGGCCATGCCCAGATGG
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| Amino Acid Sequence |
>diguanylate cyclase
MSTLVEPLRLVLLAETPDWAELLREQLSALGSPSPLITAPSWEAASNLFDDHASGLLLSTPDRLPEPHQCPLPIVLLLDEEPVEEPAGVSDWLVRGSLNL DVLRRCLRYVREQGNLKHTLQRLAEQDPLTGIANRQGFQTLLAARLAECGGRGLVLGHLDLDNFRHANDALGYQAGDRLILQVVARLKGLLQPCDQIARL GSDEFALLLDARRDPQRVEHLAERVTEVLGEPYWVDGESLLIGCSLGLAHARAGEGADPLLWHAHIAMQQAKNQQGCVFHVYDERLNRSARSQADLEGEL RRALRRDELELHYQPRLCLKSGRIVGLEALVRWQHSERGLLSPNEFVPLAEETGLIVPLGYWVISRALRDMQWLRGRGLPALHMAVNLSFRQFQDSQLLP TLSRLIEERGVDAQWLEFELTETAVMRRSDQVQQTMLALGRLGVRFSLDDFGTGFSSFVHLNNLPITLLKIDKSFVGGMGERAENRQLVRAMINLAHNLN LEVVAEGVENIEQLDMLRQFGCDQVQGYLISKAIPLAELARFLVFGLRQPLLGGG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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