Pseudomonas alcaliphila 34, D567_RS0118410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00530 | mbf_short4 | IPR001387 | Cro/C1-type helix-turn-helix domain | 6 | 62 | 2.9E-7 |
| SUPERFAMILY | SSF47413 | lambda repressor-like DNA-binding domains | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 2 | 86 | 1.55E-23 |
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 4 | 58 | 9.65866E-10 |
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 11 | 60 | 2.4E-9 |
| NCBIfam | TIGR02607 | JCVI: HigA family addiction module antitoxin | IPR013430 | Toxin-antitoxin system, antidote protein, HigA | 1 | 74 | 5.4E-28 |
| PANTHER | PTHR36924 | ANTITOXIN HIGA-1 | IPR013430 | Toxin-antitoxin system, antidote protein, HigA | 1 | 88 | 2.0E-24 |
| Gene3D | G3DSA:1.10.260.40 | - | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 1 | 90 | 1.7E-29 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.