Pseudomonas alcaliphila 34, D567_RS0114130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alcaliphila 34 IIC, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCAGCTCATCCTGGCGAATGATTTGTATGAGCGTGCGCGCCGCTGAGAAATCAGCAAAGACAGGGATGCGACCATTGGTTACGGTAGTGACAAGATAG ATTTGCCCGCTACTGGACCAGCGTCCATCACGAAGCTTATGCGCGGCGTAGCGTTTCTCAGTCATCGGATTCCCTTCCGTTAGCGTTCGCCAGTTCAGCT TAGCTTACCGAGCCAGGGGCCAGAGAAAGCTTCACCCCGAGGCGGGACTCCCACACCAAACCGCAAAACAACGCTCCCCTTGTAGGAGCTGCGCCCCGCA GCGAATGGCGGCCATTCCGCAATACCGAGCCTATACCCAAAAGCTTCGCCTCAAGCTCGATCTCCCACACAAAGCCCCCCGTTATCACAACTAACCGCAA AACTCGCTAACACCTTGTTTTTTAGGCTGTTCAAAAGCTGACCCGCGTGCTAAAACCGAACCGTCGAGTCTTCTAGCCGCTTGAAAAAGAAGGGAAAACC
|
|
| DNA Sequence for Gene |
>D567_RS0114130
ATGACCAAGTCGGAGTTGATCGAAAGAATTGTCACTCATCAGGGTCAGCTGTCCTCCAAGGATGTCGAGTTGGCCATTAAGACCATGCTGGAGCAAATGT CCCAGGCACTGGCCACGGGGGACCGCATCGAAATTCGCGGCTTTGGCAGCTTCTCGCTGCACTACCGCGCACCGCGCGTTGGGCGTAACCCGAAAACCGG CCAATCTGTCCGTCTCGACGGCAAGTTCGTGCCGCATTTCAAACCGGGCAAGGAGCTGCGCGACCGGGTCAATGAGGACGAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTGCGCTTTGTCCTTCTCGCTGGAGCAAGTCTCCTGATTAGGCGGCCGCCTGGCGTCACACTTTTGTCATGCTTGCGAAATCATGGAAAACCGGCAAAAT GTGCGGGCTTTCACAAGGCGCGCCCTTGCCAGATTTCCAGCTAGTTCAGTTAATTACCATTCTCTGAACAGTCATCCGCACTATTGGGCTGAGTCCCTTT AAATTTCGCCAGCGTTAAGGGATTGACTCGTGCGGTACCCCTCGATTGTTCATCACGGCGCCGTAACAGGTGTGACGGGCTCATGCCATCAACTGCAGAT GGATGATGAGCATGCGCTGCTGATCGACTGCGGCCTCTTTCAAGGCGCTGAAACTTCCCCTGAAGGTCGGGCAGGCGCCGGTAAACTCGCAATCGACTTT TCTCTGGACGGCATCAAGGCTCTGGTCGCGACCCATGTCCATATCGATCACGTTGGCCGCATACCCTATTTGTTAGCGGCTGGCTTCAAAGGACCGATCC
|
|
| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVRLDGKFVPHFKPGKELRDRVNEDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|