Strain | Pseudomonas alcaliphila 34 IIC, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCCTGCCCCAGGTCGATGCCTTCAACCCCGAGCGACTGCACGCGCCGGCCGCCCTGCCCGTACCGATGGGCGAAGCCGACGCCTCCGTGCCACTGATCCG CCTGGCCGTGGCCCGCTCCGGCGACAAGGGCAATCACAGCAACATCGGCGTGATGGCGAGACAGCCCGAATACCTGGCGTGGATAGCCGCTGCGTTGACA CCCGAAGCCGTGGCCAAGTGGATGGCGCATACCCTGGACGCCGAGCAGGGTCGCGTCAGCCGCTGGTACCTGCCGGGCAGCCACAGCCTCAACTTCCTGC TGGAAAACGCGCTTGGCGGTGGTGGCGTCGCCAGCCTGCGCATCGACCCGCAGGGCAAGGCGTTCGCCCAGCAACTGCTGGAATTCCCGGTGCCGGTGCC CAGGGCACTGGCCGAGACCTTGACTGGTGCGCACGGCGCACCCTACACCCGCCCGTAGGGTGCGCTGCGCGCACCGGTATCACTCAGGACAACAAGAACA
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DNA Sequence for Gene |
>D567_RS0113745
ATGAGCTACGACTCCGTATTCAAACCCGGCCTGTTCGAAGGCCAGACCATCCTGGTCACCGGCGGTGGCAGTGGCATCGGCCGCTGCGTGGCCCACGAGC TGGCCCACCTGGGCGCTCATGTGGTGCTGGTCGGGCGCAAGCAGGAAAAGCTGGAGAAGACCTGCACCGAGATCACCGAGGACGGCGGCAGCGCCAGCTT CCAGGTCTGCGACATCCGTGACGAAGAAGCCGTGAAGGCCATGGTCGGTGCTGTGATTGCGCAGCGCGGACGCATCCATCACCTGGTCAACAACGCTGGC GGCCAGTTCCCCGCGCCGCTGATCGGCATCAACCAGAAAGGCTTCGAGACCGTGGTGCGTACCAACCTGGTCGGCGGCTTTCTGGTGGCCAAGGAAGTCT TCCTGCAGAGCATGAGCAAGCACGGCGGCAGCATCGTCAACATGCTCGCCGACATGTGGGGAGGCATGCCCGGCATGGGCCACTCCGGGGCCGCGCGCGC TGGTATGGAGAACTTCACCAAGACCGCCGCCTACGAGTGGGGCCACGCCGGCGTGCGGGTCAACGCCGTGGCGCCGGGCTGGATCGCCTCCAGCGGCATG GACACCTACCCCGAGTCGATGAAGAACATGATCCGCAATCTCAAGGATCACGTGCCGCTGCAACGCATCGGCAGCGAGTCCGAGGTGGCCGCGGCCATCG TCTTCCTGCTCAGCCCCGGCGCCAACTTCATCAGCGGCAACACCATCCGCATCGATGGCGCCGCCAGCCAGGGCACCCATGCCTGGACGCTGGGCAAGGC GAAAAACAGCGAGCCCTACAACGGTTTCCACCGGGCCTACCTGCCCGATGTACTGAAAGATCAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGCGATGCCCGTGATCCAATCGGAAATCGATGTGCATGGCGAAGCCTTCGCGCAGAACCGCGAAGCCATGCTGGCAGCCATCGCAACCTTCCGCGACGTC GAGCAGAAGGTGCTCGACAAGGCGCAGGAAGCCAAGGCCAAGTTCGAGAAGCGTGGCCAATTGCTGCCGCGTGAACGCATCAACCTGCTGCTCGACGCCG GCGCACCGTTCCTCGAACTGTCCTCGCTGGCCGGCTACAAGCTGCACGACGACAAGGACGGCAGCCAGGCCGGCGGCGGCATCATCGCCGGCATCGGTTA CATCGCTGGCGTGCGTTGCCTGGTGATCGCCAACAACAGCGCGATCAAGGGCGGCACCATCTCCCCCACTGGCCTGAAGAAGTCGCTGCGCCTGCAGCAG ATCGCCTTCGAGAACAAGCTGCCGGTGGTGACCCTGGCCGAGAGCGGCGGCGCCAACCTCAACTATGCCGCCGACATCTTCGTCGAAGGTGCACGCGGCT
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Amino Acid Sequence |
>2,4-dienoyl-CoA reductase
MSYDSVFKPGLFEGQTILVTGGGSGIGRCVAHELAHLGAHVVLVGRKQEKLEKTCTEITEDGGSASFQVCDIRDEEAVKAMVGAVIAQRGRIHHLVNNAG GQFPAPLIGINQKGFETVVRTNLVGGFLVAKEVFLQSMSKHGGSIVNMLADMWGGMPGMGHSGAARAGMENFTKTAAYEWGHAGVRVNAVAPGWIASSGM DTYPESMKNMIRNLKDHVPLQRIGSESEVAAAIVFLLSPGANFISGNTIRIDGAASQGTHAWTLGKAKNSEPYNGFHRAYLPDVLKDQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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