Pseudomonas alcaliphila 34, D567_RS0112040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alcaliphila 34 IIC, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCGCCGCCTCCACCTGGGACCTGGCAGCCAACAAGCTCGTCAAGTCCAGCTAAGTTAAGGACACCACCGCTCAATGCCGCACAGCGGACTGCTACCC CCCTTGTTCGAGCGCCTCTCCACCCAGTTGGACGAGGCACCGGACTTCGACCGCAACGCCCTGGCCGAGTCCGTCCGCCTGGAGTTGGCGCGCCTGCTCA ACACTCGTCGCCCCCGACGAGCGCCCGGCCGGCCGCTCACGCTGCTCGACTATGGCATCGCCGATTGGACTGCCCTGCAAGCCCTGCGGATCGATGACCG CCGTCTTCTGCTGCGAGAACTACGCGCTGCCATTCAGTACTTTGAACCACGCCTGCAGTTGAGCGAGATCGATGTCGAGGCGCTGCCCGACCAACCCCAG CGCCTCGGCATCCGCCTGGCCGGGCGCCTACGCGGTGGTCGCCGCTCCTGGCCTGTGTTGTTCCTCCTCGCCCCCGGCGACGACGGTCTAGAGGTACGCC
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| DNA Sequence for Gene |
>D567_RS0112040
ATGAGCGACTCGATTGATGCCGATCTGCTGGACTACTACCAACGCGAACTCACGTGGCTACGCCACGCCGGTGCCGGTTTTGCCCAGCGCTACCCTAAAG TGGCGCGACGTCTGGAGCTGGCCCCGGACGAATGCCCGGACCCCCACGTCGAACGGCTGCTGGAGGGCTTCGCGCTTCTTAGCGCACGGCTCCACCGGCG TCTCGACGATGACTACGCCGAATTTAGCGACGCCCTGCTGGAGCTACTCTACCCACTGGCCCTGAGACCCCTTCCCTCCTGCAGCATCGTACAGTTCGAG CCAGACCCGACTCAGGGCAACCTCGCCGAGGGTTATACCCTGCCTCGTGACACAGCACTTTTCGTCACCACCCGAGAGGGTGCCAGCGTGCACCTGCGAA CCAGCGCCGAGGCGGTGCTCTGGCCGCTGCGCATCCGCGAGGCAATCCTGCTGGATGGCGACGCCGCCGTGGCCTTCTCCGGCCACCCACGCGCGCGCTC GGCACTGCGCCTGACTCTGGAATGCCTGGGCGAATTCGACTGGGCGGAGCTAGCGGTGCGCCGCCTGCGGATTCACCTCGCCGCTTCACCGATGACGAAC GCCACCCTCTATGACCTACTCGCTGCCCACGGCCTCGGGGTGTGGAGCGGCGCACCAGAAGCCCCGCTGCAAGCAGTGCCTGGCGATGTAGTCCCGGTGG GCTTCGGCGACCACCAGGCGCTGCTGCCTGACGAAGACGGCCAACACCCCGGCCTGCGCCTGCTGGCAGAGTACTTCGCCTTCCCCGACAAGTTCGCCTT CTTCGATCTGCCGCTGCTGCCACCGATCGATGGCGGACGTAACTGCCAGGTGCTGATCGCCTTCGACCGCGCCCCGCTGGGCAGGCCGCACCTGCAGGCC AGCGAACTGCGCCTGGGCTGCGCGCCGGCAATCAACCTGTTCCCGCGCACTTCTGAGCCCTTGCGTCCGGACGGCACCCGCAGCGAGTATCGACTGGTGG CCGACGCCCACCGCGAGAACAGCGTGGAGATTCACAGCATCCGCGCCCTGCGCGCCGCCACCCCGCAGGGCGTGCGCCGTGTACCGGCCTACTACGGCCA CAGCCACACCGGCGAAGGTCTGTACTGGCATGCCCGTCGCGTCCAGGGCCTGAATCTGGCGCGGCCCGGTAGCGACCTGCTGCTCAGCCTGGTGGACACC GCTTTCGACCCGTTGCACGAGGCCCCCGAATACAGCCTCACCGCCGAGCTCCTTTGTACCAACCGGCACCTTGCCGAGAATCTAGCCGCCGGCACCCGCC TGGGCTTCGAGCGCCCCGGCCCAGTGGCGCTGGCCAGCCTGCTGACCCCGCCGACACCCCAAAGCCTGCCGCGTCTGTCCGGCCCCTCACGCTGGCGACT GGTGTCCCAGCTGAGTCTCAATCACCTGTCCCTTGTGGAAGGCCCGAACGCGCTTGAGGCGCTGCGCGAACTGCTACACCTGCACAACCTGCGGGACGAG GCCGGGCCAAGACGACAGGTGGAAGGCCTGATAGAACTGACCTGCGAGCGCGTGGTGGCGCGGGTTGGCGAAGATGCCTGGCGCGGCTGGCGCAACGGCC TGGAGGTGCGTGTCCGCCTCGACCCGCAGCATTTCGCTGGCACCAGCGCTGTGCTGTTCTCCGCCGTACTGGCGCAGTTCTTCTCCCTCTACGCCACGCC CAACCGCTTCGTGCGTACGGTGCTGGTAGACGCCGACAAGGAGATCCGGACATGGCAGCCCCAAGCCGGCAAGCCCCTAAGCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCGCCTGCGCGAAAAGCCCCAGGCCTTCGAGTTTCTCCAGGCCCTGTTGCTGCTGGAGCGCGAACGCCCCGAGGCCACGCCGCTGGGTCAGGGCAG CAGCCCGGACGACGAAGCCCTGCGCCTGCGCGGGCCACTCACGCCGACCTTCGCCGCCAGCCAGGTGGAACGCCTGGAGGAACAGCAGGGGCAGCCGCCG GTGCTGAGCACCGCCGTATTCGGCCTCGGTGGCCCAGACGGCCCCCTGCCCTATGCCTACCAGGAATGGCTGCAGCAGCGAGCCCGCCACAAGGACCACG CCCCGGCGGAATTCCTCAACCTGTTCCAGAATCGCCTGCTCGCTCAACTCTACCGGGTGCTGAGTCGTCATCGCCTGGCCCTCGGCTTCCAGCCACCCGA GCGGGCCCCCGTCCATCAGCCACTCCTGGCTCTGGCCGGTCTGCTGCCGCACAGCCTGCAACAACGCATGGACCTGCCGGACGCAGCCCTGACCGCCCGC
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| Amino Acid Sequence |
>hypothetical protein
MSDSIDADLLDYYQRELTWLRHAGAGFAQRYPKVARRLELAPDECPDPHVERLLEGFALLSARLHRRLDDDYAEFSDALLELLYPLALRPLPSCSIVQFE PDPTQGNLAEGYTLPRDTALFVTTREGASVHLRTSAEAVLWPLRIREAILLDGDAAVAFSGHPRARSALRLTLECLGEFDWAELAVRRLRIHLAASPMTN ATLYDLLAAHGLGVWSGAPEAPLQAVPGDVVPVGFGDHQALLPDEDGQHPGLRLLAEYFAFPDKFAFFDLPLLPPIDGGRNCQVLIAFDRAPLGRPHLQA SELRLGCAPAINLFPRTSEPLRPDGTRSEYRLVADAHRENSVEIHSIRALRAATPQGVRRVPAYYGHSHTGEGLYWHARRVQGLNLARPGSDLLLSLVDT AFDPLHEAPEYSLTAELLCTNRHLAENLAAGTRLGFERPGPVALASLLTPPTPQSLPRLSGPSRWRLVSQLSLNHLSLVEGPNALEALRELLHLHNLRDE AGPRRQVEGLIELTCERVVARVGEDAWRGWRNGLEVRVRLDPQHFAGTSAVLFSAVLAQFFSLYATPNRFVRTVLVDADKEIRTWQPQAGKPLSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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