Pseudomonas alcaliphila 34, D567_RS0112005

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas alcaliphila 34 IIC, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTGATTTTCTCGAACTCAAGCGAGGCTTCGACGAAGTAATCGAGTGGCTACACCGGAACCTGGACAGCATCCGCGTCGGTTACCGTTGCTTGGTATTCGA GCATTCCGAGCAAGGGTTTTCGATTGATTTGCCAGATACCCAGACAGGTCGTCAGCGCCTTGTTGTGGGGCTGCGCATGCCGACGGGCTCTGGGCAGGAA GCTGCGCGGGCATGGCTGGGACAGGCAGTGATCGCCTCGCGACAACACGTACCGACGCTCGTACAGCAGCGCATGAGCGGTCTGCCTCACCAGCCCATGA ACCGCCACGAACGAGCCGCGTACGGTGTGGGTGAGGAAACTCACCTTTTTCTGATTCAGGCTTCCGGTGACTGGTTCGATCCGGAGCAACCACTTTGCCT GGCGGTTACCTCTCAGAGGGTGAGTTCAAGTCCCTGGCAGGTTCTTCTATTTACGACCGATAGCCACTGAAATCAGCCTTCCCAAGCCAAGGATGCATAG
DNA Sequence for Gene
>D567_RS0112005
ATGTCGCAAAGGAGCGTTTCTCTTTACCCCCCAGAGTTTGGAGAGGCACCTCTGAGCCAGGCTTTTCGCGAAGCCTGGATCGAATGGCGAGAGGTTTGGG ATGGTGTGGCAGGACTGAGCAACCCTGGCAACGAACAGATCGAACGCATGGCAGAGGCCACGATCCTCGTGGTTCGCCGTCTCTGGCGCAGCGCATTTGC CAGTGTCGGCGCATCCTCCTCGAGCCAGGTCAAGGCGATGGTCTATGCATTCGTCGCCCTGGTTGATGAACGGCTCTTGTTCGATGACTGGCCAGGCAGA TCGGCATGGCAGCCACGTCCGCTTGAAACGCGCTTGTATGGTTCGCGCAATGCAGGTGAGCGACTGCCACGCGCCATTCACAAACTCCTCAAGGAGCGTG CTCCGGCCTCTCGTGATCTGGCTAACGTCTACCTCCAGTGTTTGATTCTTGGCTTCTATGGCGGCTTGCGTAGCGACCGCGGTCGGGCGCTGCATGCGCG CTGGCGGCATGCACTTTTCACCTTCGCCTGGCAACGTGAGCCAGCGGTGAATGGCGCGATGAGCAGCCTGGCACGGCCGAGCCGTGCTGCGCCTTTACGT CTACCCATGAGGCGAGTGCTGCCAGATGGTATGCGCCTGGGACTGGCTATCTGCGGGTTGCTGGTGGTTCTGAGCACGGTCGGACACTGGATGTGGAGTG ACATTCAGTCGGAGCTGACCCCCTTGATGCATCTGATCACCATGGACGACGGTGGGAGCCCGGTTGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGCTCTCGCGATCGTTCTCAGCGTGGTAGGTATTCTCCTGCTGCTTGTAGCCCTGGCTGCTTTGTTCTGGTGGTTGCGTACTCAATCCGGTATGGCGAT TCGTAGCTTCTATGCCGCGGTACGCAGGATGGAACAGGAACAGGGGATCGAGTCGCGCTATCAGGTTCCTTGGCTGATGCTGCTCGGCGATCCGCGGGAG GGTAGCCAGCTCTGTAGCGATTGGCAGCTCACGCCTGTTGGACGTCCGGCCTGGCTCGGTCGGTGGTGGGCCGACCAGGATGGCGCCGTACTGGTGGTGC CTCAAGGCGTATTCCTGCCCGGCGATGGCAGTACTGCCTCTACCTTCGTCTGGCGTCGTCTGCTCAGTATGCTGCTTAGGCTGCGTGGCCAGCGTCCTTT GGATGGCGTGATCTGGAACATCCCACTTGGCCAGTTGCAGGACGGAGCCCAGAGTGCCGCCGACGTGGTTATTCTGCGCCGTCGCTTCGGTGAGTTGCTT
Amino Acid Sequence
>type VI secretion system protein ImpK
MSQRSVSLYPPEFGEAPLSQAFREAWIEWREVWDGVAGLSNPGNEQIERMAEATILVVRRLWRSAFASVGASSSSQVKAMVYAFVALVDERLLFDDWPGR SAWQPRPLETRLYGSRNAGERLPRAIHKLLKERAPASRDLANVYLQCLILGFYGGLRSDRGRALHARWRHALFTFAWQREPAVNGAMSSLARPSRAAPLR LPMRRVLPDGMRLGLAICGLLVVLSTVGHWMWSDIQSELTPLMHLITMDDGGSPVE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site