Pseudomonas alcaliphila 34, D567_RS0109065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 584 597 6.0E-19
CDD cd00130 PAS IPR000014 PAS domain 270 369 2.99222E-7
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 378 446 1.1E-16
Gene3D G3DSA:6.10.340.10 - - - 167 251 6.6E-10
Gene3D G3DSA:1.10.287.130 - - - 367 447 2.7E-16
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 529 543 6.0E-19
Gene3D G3DSA:1.20.120.880 Histidine kinase (KinB), sensor domain IPR038320 KinB, N-terminal domain superfamily 37 166 3.3E-40
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 493 597 2.5E-24
Pfam PF00672 HAMP domain IPR003660 HAMP domain 196 247 2.0E-6
PANTHER PTHR44936 SENSOR PROTEIN CREC - - 5 597 3.3E-83
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 560 578 6.0E-19
CDD cd00075 HATPase - - 497 596 1.6444E-34
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 376 442 1.86514E-12
CDD cd06225 HAMP - - 203 245 2.05324E-5
SMART SM00091 pas_2 IPR000014 PAS domain 261 326 1.2E-4
CDD cd19409 KinB_sensor IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 45 160 9.2055E-27
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 254 370 2.09E-15
FunFam G3DSA:3.30.565.10:FF:000006 Sensor histidine kinase WalK - - 451 598 1.6E-39
Coils Coil Coil - - 487 507 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 547 557 6.0E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 252 366 2.6E-18
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 492 598 1.9E-31
SUPERFAMILY SSF158472 HAMP domain-like - - 198 248 4.58E-5
SMART SM00304 HAMP_11 IPR003660 HAMP domain 198 250 1.7E-7
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 451 598 1.7E-44
Pfam PF08448 PAS fold IPR013656 PAS fold-4 267 373 2.6E-12
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 379 446 2.0E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 258 372 2.7E-9
Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain 39 161 5.8E-35
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 363 446 6.28E-17
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 435 598 1.44E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.