Pseudomonas alcaliphila 34, D567_RS0108445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alcaliphila 34 ID, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGGCCGATGCTGCTCAAGGTCAGCACGCCGATTACTGCTGACGATACCGGCGGCAGCCTGCATGACCGTCTCGCCCAGCTCGGCCCGCAGGCGGTGC TGCAGGCCATCGACGGCCTGGCTGCCGGCACGCTGAAGGGTGAAGTGCAGGACGATGCCCTGGCCAACTACGCACACAAACTGAACAAGGATGAGGCTCG CCTCGACTTCAGCCGCCCGGCCGTGGAACTGGAGCGCCTGGTGCGCGCCTTCCACCCCTGGCCAATCTGTCACACCACGCTGGGCAGTGATGCCCTCAAG GTGCATGCGGCCGAGATCGGCGTAGGCAAGGGTGCTCCCGGCACCATCCTCGCCGCCGACAAGCAGGGCCTGACCGTGGCCTGCGGCGAATGTGCACTGC GCCTGACCCGCCTGCAGTTGCCCGGCGGCAAGCCGCTGGCCTTCGCCGACCTATATAACAGCCGCCGCGAGCAGTTCGCCCCCGGTCTGGTACTCGGTCA
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| DNA Sequence for Gene |
>D567_RS0108445
ATGAACCCGCGCCTGGCCGCCGCCCGCGCCCTGACTGCCGTGCTCTCCGGCAAGGCTTCTCTGGGCAGCAGCCTGCCGCCGCAGCTGGACAAGGTCGAGC ACCACGACCGTGCCCTGGCACAGGACCTGGCCTTCGGCGCCGCACGCTGGCAACCGCGCCTGCAACTGCTGGCCGACAAACTGCTGGAAAAACCCTTCAA GGCTGCCGACAAGGACGTGGAAGCGCTGCTGCTGATAGGCCTCTATCAGTTGCTGCACAGCCGCATCCCGGAGCATGCCGCCATCGGCGAGACAGTAGGC TGCGCCGGAGCGCTGAAAAAGCCCTGGGCCAAGGGCTTGCTCAATGCCGTACTGCGCCGCGCACAACGCGAGCATGAAGAGATTTTCGCCGAACTGGATC GCGACCCGGTGCTACACACCGCGCACCCGCGCTGGCTGCAAAAAAAGCTCAAGGCCTTCTGGCCCGAGCACTGGCAAGCCATCTGCGCCGCCAACAACGC GCATCCGCCGCTGATCCTGCGGGTCAATCGCCGTCATGGCAGCCGCGATGACTATCTCGCCGAGCTGCGCAGCGCCGGCATCGATGCCGAACCCTGTACC TTCAGCCGCGATGGCGTGCGCCTGCTGCAACCCTGCGACGTGACCACCCTGCCGGGCTTCAAGGAAGGCCGCGTCAGCGTGCAGGACGAAGCCGCGCAAC TGGCTGCCGACCTGCTCGAACTGGCGCCACGCCAACGTGTGCTGGATGCCTGCTCGGCACCAGGCGGTAAGACCTGTCACCTGCTGGAAGTCGAGCCGGG ACTCAGCGAAGTGGTCGCCGTGGATCTGGAAGCCAAGCGCCTGGCGCGCGTTCGCGAAAACCTCGAACGCCTGCAACTCGACGCCACCCTGATCGCCGCC GACGGCCGCGATACCGGCGCCTGGTGGGACGGCCAGCCATTCCAGCGCATCCTGCTCGATGCGCCGTGCTCGGCCACCGGGGTGATCCGCCGTCATCCGG ACATAAAGCTGACTCGCAAACCTGAAGACATTCCCGCCCTGGCCCAGCTACAGGGCGAGCTGCTCGATGCGTTGTGGCCGACCCTCGCGCCTGGCGGCAT CCTGCTCTACGCCACCTGCTCGGTGCTGCCGACGGAAAACAGCGAAACCATCGCTGCCTTCCTCGCCCGCACCCCCGATGCCCGAGAAATAGCCATCGAG GGCGATTTCGGCCTGCAGCCCGCCCACGGTCGCCAGTTGCTGCCACAGCTGGACGGCCACGACGGCTTCTACTATGCCAAGCTGTTCAAAAGGCCACAGG TACTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATAGTCGTCATTACTCGCTGCGCTCGCCCTATTCGGGCCACACTAAAGTGCGTTCAGCGCAAGCGCTGTCCCGCGAAGGCGGGAACCCAGAAAACCGAA GCACCTGGGCTCCCGCCTTCGCGGGAGTGACGGTTGCCAATATTTCCAACGGAGCGTATCGGTGAAAATCATCATTCTCGGCGCCGGCCAAGTGGGCGGC ACCCTGGCGGAACACCTCGCCAGCGAGGCCAACGACATCACCGTGGTCGACACCGATGGTGATCGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCA CCGTGCAGGGCAAGGGCTCCTTCCCCACCGTGCTACGCCAGGCTGGCGCCGATGATGCCGACATGCTGGTGGCGGTGACCAACAGCGACGAAGTCAACAT GATGGCCTGTCAGGTGGCCTACACCCTGTTCCACACGCCGACCAAGATCGCCCGGGTGCGCGAGGCGGCCTACCTGACCCGCGAGGCGCTGTTCGACAAC
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAARALTAVLSGKASLGSSLPPQLDKVEHHDRALAQDLAFGAARWQPRLQLLADKLLEKPFKAADKDVEALLLIGLYQLLHSRIPEHAAIGETVG CAGALKKPWAKGLLNAVLRRAQREHEEIFAELDRDPVLHTAHPRWLQKKLKAFWPEHWQAICAANNAHPPLILRVNRRHGSRDDYLAELRSAGIDAEPCT FSRDGVRLLQPCDVTTLPGFKEGRVSVQDEAAQLAADLLELAPRQRVLDACSAPGGKTCHLLEVEPGLSEVVAVDLEAKRLARVRENLERLQLDATLIAA DGRDTGAWWDGQPFQRILLDAPCSATGVIRRHPDIKLTRKPEDIPALAQLQGELLDALWPTLAPGGILLYATCSVLPTENSETIAAFLARTPDAREIAIE GDFGLQPAHGRQLLPQLDGHDGFYYAKLFKRPQVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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