Pseudomonas stutzeri MF28, L686_22205

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00091 pas_2 IPR000014 PAS domain 13 83 0.58
Pfam PF13426 PAS domain IPR000014 PAS domain 157 273 7.6E-7
CDD cd00130 PAS IPR000014 PAS domain 291 393 6.31288E-12
SMART SM00091 pas_2 IPR000014 PAS domain 146 213 4.8
Pfam PF08447 PAS fold IPR013655 PAS fold-3 37 128 7.1E-13
CDD cd00130 PAS IPR000014 PAS domain 155 271 0.00180717
SMART SM00052 duf2_2 IPR001633 EAL domain 582 828 1.2E-123
SMART SM00086 pac_2 IPR001610 PAC motif 91 134 0.0011
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 271 400 3.2E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 139 272 1.96E-14
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 412 573 9.02E-50
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 409 578 4.4E-62
CDD cd01949 GGDEF IPR000160 GGDEF domain 408 570 2.52941E-64
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 587 835 4.84E-91
CDD cd01948 EAL IPR001633 EAL domain 588 828 4.77565E-120
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 389 842 0.0
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 582 840 7.8E-104
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 402 574 9.8E-44
SMART SM00091 pas_2 IPR000014 PAS domain 282 348 1.2E-7
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 404 570 7.4E-41
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 143 284 4.4
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 142 281 5.3E-8
Pfam PF13426 PAS domain IPR000014 PAS domain 294 395 1.3E-15
SMART SM00086 pac_2 IPR001610 PAC motif 354 396 5.8E-6
CDD cd00130 PAS IPR000014 PAS domain 23 131 8.22696E-7
SMART SM00086 pac_2 IPR001610 PAC motif 232 274 2.1E-4
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 407 568 1.5E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 285 402 6.5E-20
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 583 838 1.5E-98
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 271 393 1.24E-24
Pfam PF00563 EAL domain IPR001633 EAL domain 588 823 5.7E-75
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 10 136 8.6E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 3 132 4.9E-21
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 222 830 0.0
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 7 145 1.4
SMART SM00267 duf1_3 IPR000160 GGDEF domain 396 572 1.9E-67
Gene3D G3DSA:3.30.450.20 PAS domain - - 144 283 3.5E-20
Gene3D G3DSA:3.30.450.20 PAS domain - - 284 408 3.0E-31
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 3 132 2.62E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.