Pseudomonas stutzeri MF28, L686_02790 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri MF28 contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCATTGGTCGTCTGTGATGCCCAGGACCGTGAGTTCTTCGCCACCAAGGTGTTCTTCGTAGAGGCGAACGGTAACCCGACTGTCCTCCTGCGCGTGG CAGTCGCAGCGATAGGGATGAAGGTAGTTGCGAAGGATATTTTCGATCGTCAACAGAGGTAGACGTGAAGCCATACTCCTTCCTCCCATCGTTTGCCTGG GTCCGCAAACTCGCTCGCAGTCGGTTGCCACCCAACGGCGGGGGCACTTCTCAACGCTAGCAGGCCGCGCCCGGTTGTAAACACTTGAAGACGTCCGTTT AGCGGAAGAAAGCGGTATCAGGCGGGGGCTGCGACACTTTTACGCACGGCGCGAGCGCCGATGGACGAGAGTCAACTTGATGAAAGCGATCACCACCATG ACGGTCTTGTTGGCGAGCCTTGCGGTGTCGTCGACTTTTGCTCAATCACTAAAACAAGGAATCTGAAACGGACGTTGTCCGGGTAACGGAGCCTGCCACC
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| DNA Sequence for Gene |
>L686_02790
|ligD
ATGGCCCTCGACGAGTACAACCGCAAACGTGATTTCGCTGCCACGCCCGAGCCGGGCGGGGAAACCAAGCCCACCGGCAAACGCGGCCGGCAACAGGCGT TGCAATATTGCATCCAGAAGCACGACGCGACGCGGCTGCACTACGATTTTCGTCTCGAGCTGGACGGTACGCTGAAGAGCTGGGCCGTGCCCAAGGGGCC ATCGCTGGACCCCAAGTCGCGGCGATTGGCCGTGCATGTCGAAGACCATCCGCTGGACTACGCCACATTCGAAGGCACCATTCCGGCAGGGCATTACGGC GCCGGCGATGTGATCGTCTGGGACCGGGGTATCTGGATTCCCCAAGGCGACCCGAAGGAGGGCTATCGCAAGGGCAAACTCAAATTCACGCTGCAAGGGG AAAAGCTGAGCGGCGCCTGGAACCTGGTGCGTACCCGCATGGAGGGCGGCAAGGAGCAATGGTTTCTGATCAAGTCGAATGACGAGAGCGCGAGACCCGA GAGCGAGTACGACATCGTCCGCGAGCTGCCTGACAGCGTGCTCAGCGATCGGACGCTGATTCCGCGCAAGCGCGGCAAGGCCAAGCGAGAGGTCGACGCC AAGCCGGTCAAGACGCCTACCGCGCGCCGCACTCGAAAAAAGACCGGCCAAGTGACGCTGTCCGGCGCCAAGGCCCTCGCGCTGCCCGACAGCATCAAGC CGCAGCTGGCGACCCTCGTGGAGTCGGTGCCGGACGGCGATTGGCGCTACGAGGTCAAGTTCGACGGCTATCGCATCATGGCGCGGATCGACTCGGGCAA GGTGCAGCTGTTCACCCGCAATGGCCACGACTGGACTGCCAAGATGCCGCAACAAGCCGAGGCGCTTGCCGCACTGGGGCTCGAGTCGGCCTGGCTCGAC GGCGAGGTGGTGGTGCCCAACGAGGACGGAACCCCCGATTTCCAGGCACTGCAGAATGCCTTCGAGGTCGGCCGCAGCGGCACTATCATTTATTACCTGT TCGATCTGCCGTACCTGAACGGCATGGACCTGCGCGAAGTGCCGCTGGAGGAGCGCCGTGCCGCGCTGAGCCAGGTACTGGAGCATAACGACAACGACCT GCTGCGCTTTTCCGCCGACTTCACCGAACAGCCTGAGAGCGTGTTGGAGAGTGCCTGCCAGATGAAGCTCGAGGGGTTGATCGGCAAGCGCGTCGGCAGT ACCTACGTGTCCAAGCGCAGTAGCAGTTGGGTGAAGATCAAGTGCAAGAATCGCCAGGAATTCATCATCGTCGGCTATACCGACCCCAAGGGCGCACGCA GCGGTTTCGGCGCTTTGCTGCTGGGGTTGCATGACGAGGCGGGCGCATTGCATTACGCCGGCAAGGTAGGCACCGGCTTCAACCAGGTCACGCTCAAGAA CCTGCATGCCAAGTTGCAGGCGCTGGAGGTCGACAAGAGCCCCTTGGCCAAGGCACCGCCCGCCGCGGATGTGCGAGGGGCACACTGGCTCAAGCCGGAG CTCATGTGCGAGGTGGCCTTTGCCGAAATGACGCGCCAGGGGGTGATTCGCCACTCGGTGTTTCATGGCCTGCGCTCGGACAAGCCCGCCCAGGCGATCA CCCATGAGCGTCCGGCGAAAGCGTCGACGACGCGTTCGGGGACGACCGCGGCCAGCACGGCGCCCAGCGCGGGCACGATCAAGATCTCTAATCCGGAGCG CATCATCGACAAGACCATCGGCGCGACCAAGATGGAGCTGGCCCGTTTCTATGCCGAGGTGGCGCCATGGGCACTGCCGCATCTGCGCCATCGCCCCTTG GCACTGGTGAGGGCACCGGAAGGGATCGATGGCGAATTGTTCTTCCAGAAACACACGGAAAAACTGAGCATCCCGCACATTACCCAACTGGATACCGCGC TGTTTCCCAAGCATGCCGCGTTGATGACCATCGATACGCCCGAGGCGTTGGTCAGCGCCGCGCAGATGGGCACGATCGAGCTGCACACCTGGAATGCGGT GGCGCCGGTGCTCGATCATCCGGATCGCTTCGTACTGGATCTGGACCCCGATCCGGCCTTGCCGTGGAAGCGCATGATCGAAGCGACCCAGCTGACCCAG ACGCTACTCGATGAGATCGGGCTGCAATCCTTCCTCAAGACCAGCGGCGGCAAGGGTCTGCACATTCTGGTGCCGCTCGACCCGGTTCATGGCTGGACGG AGGTCAAGGCGTTCAGCCAGGCCATCGCACAATACCTGGCCAAGCTACTGCCCCAGCATTTCTCGGCGGTCAGCGGACCGAAGAACAGGGTGGGGCGGAT CTTCATTGATTACCTGCGCAACAGCCAGGGTGCCAGTACCGTTGCCGCCTACTCGGTGAGGGCACGCGAGGGTTTGGGGGTATCGGTACCAATCCATCGT GATGAACTGGCCGAGCTCAAGGGCGCCAACCTCTGGACCATCCGCAACCTGATGCCGCGGCTGGAAGAGCAGCGTGACGATGACCCCTGGGCCGGCATCG ATGCGCCGAGGCAACGGATTACCGCCGACATGCGAGAACGGCTGCGCATGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCGAACCGCCGATTAGTGATCGATGCAGTCGGCGCCCTGACGCAGGTAGCTCATCGTATGGGTTTCGCCTTTCGAATCCAGATAGGTCATCGTGGCT TCGACCACCGAGCAGCCGCCGTTCGGCACCTCCATCGAAATCACCTTGGCGACATCCAGGTCGTCGCCATAGTGATATGGCGTCGGCTGCGGGGCGGCGA CCGCCAATTGAGCGAACAGCGACAAGCCGGCAATCCAGACTAGATGTTTCATATCCACCTCTTTGCGCAGAGCCTCGCCAGGTGGCGCGGGCTCGGAATT AAAACGGCTGCCCAACGAGGGGAGGCAGCCAGAAAAGCGACAGACGTCGACCCAAAGGAGCATTCATCGATCGATGCGGCGAGAGACCTTGGTCAACCGC CGCTCTGTCACTGCGCAAAGGATAAGAAGCACCGACGCTGTGAAAAATGGCTGTTCAGGAGAGACAGTCTTACCCAAAAGGTAACAATGCTCAGATCCAG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MALDEYNRKRDFAATPEPGGETKPTGKRGRQQALQYCIQKHDATRLHYDFRLELDGTLKSWAVPKGPSLDPKSRRLAVHVEDHPLDYATFEGTIPAGHYG AGDVIVWDRGIWIPQGDPKEGYRKGKLKFTLQGEKLSGAWNLVRTRMEGGKEQWFLIKSNDESARPESEYDIVRELPDSVLSDRTLIPRKRGKAKREVDA KPVKTPTARRTRKKTGQVTLSGAKALALPDSIKPQLATLVESVPDGDWRYEVKFDGYRIMARIDSGKVQLFTRNGHDWTAKMPQQAEALAALGLESAWLD GEVVVPNEDGTPDFQALQNAFEVGRSGTIIYYLFDLPYLNGMDLREVPLEERRAALSQVLEHNDNDLLRFSADFTEQPESVLESACQMKLEGLIGKRVGS TYVSKRSSSWVKIKCKNRQEFIIVGYTDPKGARSGFGALLLGLHDEAGALHYAGKVGTGFNQVTLKNLHAKLQALEVDKSPLAKAPPAADVRGAHWLKPE LMCEVAFAEMTRQGVIRHSVFHGLRSDKPAQAITHERPAKASTTRSGTTAASTAPSAGTIKISNPERIIDKTIGATKMELARFYAEVAPWALPHLRHRPL ALVRAPEGIDGELFFQKHTEKLSIPHITQLDTALFPKHAALMTIDTPEALVSAAQMGTIELHTWNAVAPVLDHPDRFVLDLDPDPALPWKRMIEATQLTQ TLLDEIGLQSFLKTSGGKGLHILVPLDPVHGWTEVKAFSQAIAQYLAKLLPQHFSAVSGPKNRVGRIFIDYLRNSQGASTVAAYSVRAREGLGVSVPIHR DELAELKGANLWTIRNLMPRLEEQRDDDPWAGIDAPRQRITADMRERLRMK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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