Strain | Pseudomonas stutzeri MF28 contig2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCTGACGTCGCTCGCAGCTTGCTCAAACCACCGCAACCCTCGGCCATGCGGCAATCGCTGGCCACGCCGCAGCCTTGCGGGAAGTTTTACCGCTTCCCTA ATGGCTGGTGATTTTTTAGACTATCCCGTCCGCTCGCCCATTCGGGCATGCTCTACCGTTATTGATGAGGAACACCATGGCCCGCGTTACCGTTGAAGAC TGTCTGGACAACGTAGATAACCGCTTCGAGCTGGTCATGCTCGCCACCAAGCGCTCGCGCCAGCTGGCGACCGGCGGCAAGGAGCCCAAGGTAGCCTGGG AAAACGACAAGCCGACCGTCGTGGCGTTGCGTGAAATCGCCTCCGGACTGGTCGACTACGACGTTATCGCGCAAGACGATATCGTCGACGACGAGCCGCT GTTCGTTCAGTACGAGGAAGAACCCAACGAGGCTCTCTGAATAAATGCCAGGTCGAAGTCGAACCGCAGCCATAGCGCCCCGCTGGCAAGGAGTAAGCTC
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DNA Sequence for Gene |
>L686_01480
TTGCCGGCCATAGACGCTCTTGCCGATCGCCTGTCGACCTACCTCGGCGCGGACCAAGTCAACCTGGTGCGCCGTGCCTATTTCTACGCCGAGCAGGCCC ACGACGGCCAGCGTCGGCGCAGCGGTGAAGCCTACGTCACCCACCCCCTCGCGGTAGCCAACATCCTCGCTGACATGCACATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCATGACGTCATCGAGGACACCGGCATCGCCAAGGAAGCGCTCACCGCGCAGTTCGGCGAAACCGTCGCCGAACTGGTGGACGGCGTC AGCAAGCTGACCCAGATGAAGTTCGAGACCAAGGCCGAGGCCCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTCGAGGTGTTGGCCGGTGAGAAACGCCGGCGTATCGCCAAGGAAACCCTGGAAATCTACGC ACCCATCGCCAACCGGCTGGGCATGCATGCGATGCGTGTGGAGTTCGAGGATCTGGGCTTCAAAGCCATGCACCCGATGCGCTCGGAGCGCATCCGCGCC GCCGTCCGCCGCGCCCGTGGCAACCGTAACGAGATCGTCGAGAAGATCGAGCAGTCGCTGATCCACTGCCTCGAGCGCGAAGGCCTGCACGGCGAGGTAG TCGGCCGCGAAAAGCACCTGTTCAGCATCTACAAGAAGATGCGCGGCAAGCGCAAGGCGTTCAACGAGATCATGGACGTCTACGCCTTCCGCATCGTGGT CGACAAGGTCGACACCTGTTACCGCGTACTCGGTGCGGTGCACAGTCTCTACAAGCCGCTGCCCGGCCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACTCTGTTCGGCATGCACGGCGTGCCCATCGAGATCCAGATCCGCACTCGCGAAATGGAAGAGATGGCGAACAACG GCATCGCCGCCCACTGGCTGTACAAGTCCAACGGCGACGAGCCCCCCAAGGGGACCCATGCGCGCGCCCGACAGTGGGTCAAGGGCGTGCTGGAACTCCA GGAGCGGGCCGGTAACTCACTGGAGTTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTTACGCCCAAGGGCAGCATCATGGAG TTGCCCAAGGGTTCGACCGCGGTGGATTTCGCCTACGCCGTGCATACGGACGTCGGCAATACGTGCATCGCCTGTCGCGTCAATCGACGCCTGGCGCCGC TGTCGCAGGCGCTGGAAAGCGGCAGTACGGTGGAAATCGTTACCGCGCCAGGCGCCAGACCGAATCCTGCGTGGCTCAATTTTGTGGTCACTGGCAAGGC ACGTACGCATATCCGTCACGCGCTCAAACTGCAACGCCGCTCGGAGTCGATCAATCTCGGCGAACGGCTGCTGAACAAGGCACTTACCGGCTTCGAAACC AGCCTGGAAAGCATTCCTCAAGAGCGCATCAAAGCGGTGCTCAACGAATATCAGATGGAGGTCATCGAAGACCTGCTCGAAGACATCGGGCTGGGGAATC GAATGGCCTACGTCATCGCTCGGCGCCTGCTGTCGAGTGACGGCGCGCAGGCGCCGAGTGCCGAAGGACCTCTGGCGATCCGCGGCACCGAGGGGCTGGT ACTGAACTACGCCAAGTGCTGCACGCCGATCCCTGGCGACCCCATCGTCGGCCACCTGTCAGCGGGCAAAGGCATGGTGGTGCACCTGGATACCTGCCGA AACATCGCCGAAGTCCGCCACAACCCCGACAAATGCATCCAGCTGTCCTGGTCCAAGGATGTCACTGGCGAATTCAACGTGGAGCTGCGGGTTGAGCTGG AGCACCAGCGCGGCCTGATCGCCCTGCTGGCAGGCAGCGTCAACGCGGCCGATGGCAACATCGAGAAGATCGGCATGGACGAGCGCGACGGCCGTATCAG TGTCGTTCAGCTGGTGGTCAGCGTGCATGACCGGGTGCATCTGGCCCGGGTGATCAAAAAACTGCGAGCCATCAAGGGCGTCATGCGCATCACGCGGATG AAGGCCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGACCCTGCCTGTTCCACGCTCGCCACGGGGCTTTTGCCCGCTCGCGCCAGCCCGTATCCTCTGGGGCCGCACTCTTCTATCGGAGCACTCCATGAGCAA GACCGTCATCAATACCGACAAAGCCCCCGCCGCCATCGGCACCTACTCCCAAGCGATCAAGGCCGGAAATACCGTCTACCTGTCCGGACAGATTCCGCTG GACCCGAAAAGCATGGAGCTGGTGGAAGGCTTCGAAGCTCAAACCGTGCAGGTCTTCGAGAACCTCAAGGCAGTGGCCGAAGCCGCCGGCGGCTCGCTGA AAGACATCGTCAAGCTCAACATCTTCCTTACCGACCTGGGCAACTTCGCCACGGTCAACGAAGTCATGAGCCGCTATTTCCAGCAACCCTATCCGGCCCG CGCCGCCATCGGCATCGCTGCGCTGCCCAAGGCCGCGCAGGTGGAAATGGACGCCGTTCTGGTACTCGACTGAACCACCCCATTCGTTCCGACAACCTGA
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Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPAIDALADRLSTYLGADQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVAELVDGV SKLTQMKFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLAGEKRRRIAKETLEIYAPIANRLGMHAMRVEFEDLGFKAMHPMRSERIRA AVRRARGNRNEIVEKIEQSLIHCLEREGLHGEVVGREKHLFSIYKKMRGKRKAFNEIMDVYAFRIVVDKVDTCYRVLGAVHSLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNGDEPPKGTHARARQWVKGVLELQERAGNSLEFIESVKIDLFPDEVYVFTPKGSIME LPKGSTAVDFAYAVHTDVGNTCIACRVNRRLAPLSQALESGSTVEIVTAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKALTGFET SLESIPQERIKAVLNEYQMEVIEDLLEDIGLGNRMAYVIARRLLSSDGAQAPSAEGPLAIRGTEGLVLNYAKCCTPIPGDPIVGHLSAGKGMVVHLDTCR NIAEVRHNPDKCIQLSWSKDVTGEFNVELRVELEHQRGLIALLAGSVNAADGNIEKIGMDERDGRISVVQLVVSVHDRVHLARVIKKLRAIKGVMRITRM KA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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