Pseudomonas stutzeri MF28, L686_09135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri MF28 contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACCAAGGTGTTCGACAAGTCGTCGCCGCTGATCTTCAACGCCCTGACCTCCGGTGAGCGCCTGAACAAGTGCCGCCTGGAGTGGTACCGCACCTCGTCC ACCGGCACCCAGGAACACTACTTCACCATCGAACTGGAAGATGCGGTGATCGTCGACGTGCAGTCGCGCATGCCCAACTGCCAGGATCCGAACATGTCGC ACTTCACCCATCTGGAAGACGTGTACTTCACTTATCGCAAAATCGTTTGGACTCACGAAGTCTCCGGTACCTCCGGTTCCGACGACTGGCGCACCCCGAT CGCCAGCTAAGCGATCACCGCATCAAAGACTTTGGCCGGGCACGTCCCGGCTGAAGCCTTTTTTGCGAAGCAGTAACAGAAATTGAAACCGCGGCGAAAC AATGCGCGACCCAGCGCACCGCAACGCCGTCGATGCGTGGTACATCAGGCCCCCGCATGCGCCCTGGCGCACACCATGGACGGATCCAGGAGGAACAAGG
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| DNA Sequence for Gene |
>L686_09135
ATGTTCGCCCCCGCCAACCAGACGCACTTTTCCCTGCACATCGAAGGCATCGAGCACGACCTTCAAATACTTGAGTTCAGCGGCCGCGAAGCCATCAGCC AGCCCTACCGCTTCGAACTGGAGCTGGTCTGCGAGCGTCCAGATATCGATCTGGAGAGCCTGCTTCAGCAGTCCGCCTTCCTGGCATTCGCCGGGAGTGG TGCCGGCATTCACGGCCAGATCCATCACGCCGCACAAGGCGAATCCGGCAAGCGGCTGACGCGCTACCGACTGGTCCTCGTCCCCAGGCTTGCCTATCTG ACGCACCGGACCAACCAGCGCATCTTCCAGCACCTCTCGGTGCCGCAGATCATCGCCCGGGTACTCGAAGAGCACGGCATTCTCGCCGGCGACAGCCATC GTTTCGACCTTGGCCCGGTGATCTATCCCGAGCGGGATTACTGCGTTCAATACGACGAAACCGACCTGCACTTCATCCAGCGCCTGTGCGAGGAAGAAGG CATTCACTACCATTTCCGACACAGCGAAACCGGCCATATGCTGGTGTTTGGCGATGACCAGACGGTGTTCCCGACGCTGGCCCCGGTCGCCTACCAGCAG GACAGCGGCCTGGTCGCCGATGAGCCGGTCATCAAGCGCTTCGGCGTACGTGTCGAGACCCGCACCAGCCGCGTCACCCGCCGCGACTACGATTTCGAGA ATCCCCGCCTGACGATGGAAGCGGCGGTTCAGATCGATATTCAGCCCGACCTCGAGGACTATGACTATCCCGGCCGCTTCGTCGACCGCGAGCGCGGCAA GCACCTGTCCCGTCGCGCCCTGGAACGACACCGCCACGATTTCGAGCTGGCCGAAGGCGCTAGCGATCAGCCGCTGTTGGTCAGTGGCCATTTCCTCTCG CTCAGCGAACACCCGCGCGGTGACTGGAATCAGCTATGGCTGCTCACCGAGATTCACCACGAAGGCAAGCAACCGCAGGTACTGGAAGAGTCGATCACCG ACTCCGCACCCTACGGAGCGCAAGACCCGGTCGATGACACCGGCTTCACCCAAGGCTATCGCAACCACTTCACCGCCACGCCTTGGACCGTCCCCTTCCG CCCCACGCTCGATCACCCCAAGCCACGCATCCTTGGCAGCCAGAGCGCGGTGGTTACCGGCCCGCCCGGCGAAGAGATCCACTGCGATGAATATGGCCGT GTGAAGGTGCAATTCTTCTGGGATCGCCATGGCCAGGCCGACGACAAAACCAGCTGCTGGCTACGCGTTTCATCGAGTTGGGCCGGTGATCAATACGGCG CCATCGCCATTCCCCGCGTCGGCATGGAAGTGCTGATCACCTTCCTCGAGGGCGATCCCGACCAACCGCTGATCACTGGCTGTCTCTACCACAAGGAAAA CGCGGTTCCCTACGAACTGCCCGCGAACAAGACCCGTAGCGTCTTCAAGACCCTGAGCTCGCCCGGCGGCGGTGGTTACAACGAACTTCGCATCGAAGAC CGCAAAGGCGCCGAGCAAATCTACGTTCACGCCCAGCGCGACTGGGACCAAAACATCGAGCACGACCAGAAAATCCGCGTCGGCCACGAGCGCCACGACA CCGTCGAAGCCAACAGCTACAGCGAGTTCCGCGCCGAAGAACACCGCACCACACACGCCGATCGCCGCAGCGAAATCAAAGCAAACGACCACCTGACGGT GGGCAACAACCAGCACGTGAAGATCGGCACCGGCCAGTTCATCGAAGCCGGCAACGAAATCCACCTCTCCAGCGGCCTCAAGGTCGTCCTCGAAGCCGGC AGCGAACTGACCTTCAAGGCCGCGGGCAGCTTTATCAAGCTGGATGCAGCCGGCATCACGATGGTCGGGCCGATGATAAGGATGAATTCTGGCGGCAGTC CGGGTAAGGGGTCGGGGGCAACGCCGATTCGGCCAGGGCAGGTGATGCCGGCGGATGCTGATGCGCCAGGCGCACTGCTCAAGCAGCGCCTGCGTGAAGA GCTGCCCATCGTCGAGCTCTGCCAAAAGCCCAAAGGCGGAACGCCTTTGCAATGCCCGCTTACCGACTGTCCCTGCCGCAAGGCCATGACTGCCGGGGCC AGCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCACCGTTCAATGGCTTCTGCTCGAGCGCACGGAGCAACTGCTGCCCGAGCTTTACCGCCTGGGTGAAGCCCCTGACCCGATTCGCCTGTTCGATAGCAC CGAGCTGGCCGAATGCGAGGAAGAGAGCCCTCTTTTGATCAACGCGCAAACCAACCTATCCGTGCTGGCCGCCGCACAAAGCCAGCCAAAAGGTTGGCCA GGTCTACTGATAGAAACAGCAAGCCCAACAGAAGAAATGCTGACTCATCTACGCCAAATACTGTTCATCCGATTCGATCAGGAGCGCCGCGGCATACTGC GCTACTCCAGACAGCGTACTGCCAGCTACTTCTTTCCAGCCTGTGACCACGAAACACGTCCCATCTGGCTGGGCCCGATACAGCGGCTGAGCTGGTATGG CGGTACCTGGCATGACTGCGCCGATGGCCGTGAGGCCTGGCATCACATCGAAAATCAACAGGCAACAATGTGGCACGCAGGCGCCATTGCGTACGAACTG
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFAPANQTHFSLHIEGIEHDLQILEFSGREAISQPYRFELELVCERPDIDLESLLQQSAFLAFAGSGAGIHGQIHHAAQGESGKRLTRYRLVLVPRLAYL THRTNQRIFQHLSVPQIIARVLEEHGILAGDSHRFDLGPVIYPERDYCVQYDETDLHFIQRLCEEEGIHYHFRHSETGHMLVFGDDQTVFPTLAPVAYQQ DSGLVADEPVIKRFGVRVETRTSRVTRRDYDFENPRLTMEAAVQIDIQPDLEDYDYPGRFVDRERGKHLSRRALERHRHDFELAEGASDQPLLVSGHFLS LSEHPRGDWNQLWLLTEIHHEGKQPQVLEESITDSAPYGAQDPVDDTGFTQGYRNHFTATPWTVPFRPTLDHPKPRILGSQSAVVTGPPGEEIHCDEYGR VKVQFFWDRHGQADDKTSCWLRVSSSWAGDQYGAIAIPRVGMEVLITFLEGDPDQPLITGCLYHKENAVPYELPANKTRSVFKTLSSPGGGGYNELRIED RKGAEQIYVHAQRDWDQNIEHDQKIRVGHERHDTVEANSYSEFRAEEHRTTHADRRSEIKANDHLTVGNNQHVKIGTGQFIEAGNEIHLSSGLKVVLEAG SELTFKAAGSFIKLDAAGITMVGPMIRMNSGGSPGKGSGATPIRPGQVMPADADAPGALLKQRLREELPIVELCQKPKGGTPLQCPLTDCPCRKAMTAGA SA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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