Strain | Pseudomonas putida LS46 Contig18, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCCCGGGTGCCCAGGGTGGCCCGCTGATGCACGTGATCGCTGCCAAGGCGGTGTGCTTCAAGGAAGCGCTGGAGCCTGGATTCAAGGCCTACCAGCAGCA AGTGATCGAAAACGCCCAGGCCATGGCCCAGGTGTTCATCGACCGTGGCTACGATGTGGTTTCCGGTGGCACCGACAACCACCTGTTCCTGGTCAGCCTG ATCCGTCAGGGCCTGACTGGCAAAGACGCCGACGCCGCCCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGT TCGTCACGTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCT CGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACC
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DNA Sequence for Gene |
>PPUTLS46_024683
ATGCAACGTTACTCGGGCTTCGGCCTTTTCAAGCACTCCCTCAGCCACCACGAAAACTGGCAGCGCATGTGGCGCACGCCAACCCCTAAAAAGGTTTACG ACGTGGTCATTGTCGGCGGTGGCGGTCATGGCCTGGCCACGGCCTACTACCTGGCCAAAGAGCACGGCATCACCAACGTTGCCGTGATCGAGAAGGGCTA CCTGGGCGGCGGCAACACCGCCCGTAACACCACCATCGTGCGTTCCAACTACCTGTGGGACGAGTCGGCGCACCTGTACGAGCACGCCATGAAGCTGTGG GAGGGCCTGTCCCAGGACCTGAACTACAACGTGATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCCTGCAGGACATGCGTGACTCCGAGCGTC GGGTCAGCGCCAACCGCCTCAACGGCGTGGATGGCGAGCTGCTGAACACCGCCCAGGTTGCGGCCGAAATCCCGTACCTGGACTGCTCGAAGAACACCCG CTACCCGATCCTCGGCGCCACCGTACAGCGCCGTGGCGGCGTTGCCCGTCACGATGCCGTGGCCTGGGGCTTCGCCCGCGCTGCCGACGCCCTGGGCGTC GACCTGATCCAGCAAACCGAAGTGATCGGCTTCCGCAAGGAAAACGGCGCGGTCATCGGAGTGGAAACCAACAAAGGCTTCATCGGCGCCAAGCGCGTCG GCGTGGTCACCGCCGGTAACTCCGGGCACATGGCCAAGCTGGCCGGCTTCCGCCTGCCGCTGGAATCGCACCCGCTGCAAGCGCTGGTATCCGAGCCGAT CAAGCCGATCATCGACAGCGTGATCATGTCCAACGCCGTGCACGGCTACATCAGCCAGTCCGACAAAGGCGACCTGGTGATCGGTGCCGGTATCGACGGC TGGGTCGGCTACGGCCAGCGCGGTTCGTACCCGGTGATCGAGCACACCCTGCAGGCCATCGTCGAGATGTTCCCCAACCTTTCGCGTGTTCGCATGAACC GCCAGTGGGGCGGCATCGTAGACACCTCGCCGGACGCCTGCCCGATCATCACCAAAACCCCGGTCAAGAACATGTTCTTCAACTGCGGTTGGGGTACTGG CGGCTTCAAGGCGACCCCCGGTTCGGGCAACGTCTTCGCCGCGAGCCTGGCCAAGGGCGAAATGCACCCACTGGCCGCGCCGTTCTCCATGGACCGTTTC TACAACGGCGCACTGATCGACGAACACGGCGCCGCCGCCGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGGAGACACCGTCATGTTGCATATTTTCTGTCCCCACTGCGGCGAGCTGCGCTCCGAAGAAGAGTTCCACGCCTCTGGCCAGGCACACATCGCCCGCCC GCTGGACCCTAACGCCTGCTCCGACGAGGAGTGGGGTACCTACATGTTCTACCGTGACAACCCACGCGGTATTCACCATGAACTGTGGGACCACGTTGCC GGCTGCCGCCAGTACTTCAACGTCACCCGTGACACCGTGACTTACGAAATTCTGGAAACCTACAAGATTGGCGAGAAGCCGCAAGTGACCGCCAATGGCA AAGCCGCCAGCGCCACGTCGACCGTCAAAGGCCAAGGGGAAAAAGTATGAGCCAGACCTATCGCCTCGCCAGCGGCGGCCGTATCGACCGCAGCAAGGTC CTGAACTTCACCTTCAACGGCAAGACCTACCAGGGTTATGCCGGTGACAGCCTGGCCGCCGCGTTGCTGGCCAACGGCGTCGACATCGTTGGCCGCAGCT
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Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVIEKGYLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNTAQVAAEIPYLDCSKNTRYPILGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGAVIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPLESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTLQAIVEMFPNLSRVRMNRQWGGIVDTSPDACPIITKTPVKNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSMDRF YNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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