Pseudomonas putida LS46, PPUTLS46_023943 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACCGTTCAGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAG TATGCAGGACCCGTTAGCGGACATGCTAACTCGCATCCGTAATGCCCAGATGGCTGAAAAGTCCGTCGTAAGCATGCCTTCCTCTACCCTGAAGGTCGCG GTTGCCAAAGTTCTGAAGGACGAAGGTTACATCGCTGGCTACCAGGTAACTGGTGAGGCCAAGCCTTCCCTGTCGATCGAACTGAAGTACTTCGAAGGCC GTCCGGTCATCGAGGAACTGAAGCGCTCCAGCCGTCCAGGCCTGCGCCAGTACAAGGCCGTCACCGATCTGCCGAAAGTACGTGGCGGTCTGGGCGTGTC TATCGTCTCCACCAACAAAGGTGTGATGACTGATCGCGCTGCGCGCGCTGCCGGTGTCGGCGGCGAAGTTCTGTGCACAGTGTTCTAAGGGGGGATAGAC
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| DNA Sequence for Gene |
>PPUTLS46_023943
|rplF
ATGTCTCGCGTCGCTAAGAACCCCGTTAAGCTGCCATCCGGTGTCGAAGTCAAATTCGCCGGTCAGCAGCTTTCGGTGAAGGGTGCCAAAGGTACTCTCG AACTGAACGTTCACTCGTCTGTTGAAGTTACCGAAGAGTCTGGTGAGCTGCGTTTCGTCGCTCGCAATGGTGACCAGCAAGCTCGTGCCATGGCCGGTAC CACCCGCGCTCTGGTCAACAACATGGTCCAAGGCGTAAGCCAAGGCTTCGAGCGCAAGCTCCAGCTGGTCGGTGTTGGTTACAAGGCACAGGCTAAAGGC ACCGTCCTGAACCTGGCCCTGGGCTTCTCTCACCCAGTGGACTACGAACTGCCAGCCGGTATCACCGCTGAAACACCTAGCCAGACCGACATCCTGATCA AGGGTATCGACAAGCAGCTGGTAGGTCAGGTGGCCGCTGAAATCCGCGACTTCCGTCCGCCAGAGCCTTACAAAGGTAAAGGTGTGCGTTACGCGGACGA AGTAGTCCGTCGTAAAGAAGCCAAGAAGAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCTAGTAAATGACCGACAAAAAAGTTATTCGACTGCGTCGCGCTCGCAAAGCACGTCTCAAGATGCACGAACTCGAAGTCGTGCGCCTGTGCGTGTTC CGCTCCTCGCAGCACATCTACGCCCAGGTCATTTCGGCCGACGGCAGCAAGGTTCTGGCAAGCGCCTCGACCTTGGACAAAGACCTGCGTGATGGCGCCA CTGGCAACATCGACGCGGCCACTAAGGTTGGCAAGCTGGTAGCTGAGCGTGCGAAAGCCGCCGGTGTATCTCAAGTTGCCTTTGACCGTTCCGGCTTCAA GTACCATGGCCGCGTCAAAGCGCTGGCTGATGCTGCTCGTGAAGGCGGGCTGGAGTTCTAAGTTATGGCAAATAACGATCAAAAGCGCGACGAAGGCTAC ATCGAGAAGCTGGTTCAAGTTAACCGCGTTGCCAAAACCGTAAAAGGCGGCCGTATCTTCACCTTCACCGCGCTGACCGTGGTTGGTGATGGTAAAGGTC
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| Amino Acid Sequence |
>50S ribosomal protein L6
MSRVAKNPVKLPSGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEESGELRFVARNGDQQARAMAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKG TVLNLALGFSHPVDYELPAGITAETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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