Pseudomonas putida LS46, PPUTLS46_023523
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCCAGGGCGCGGCAGGCGCTGCTCGCATTTAACTGGCCGGGGAACGTGCGGCAGATGCGCAATGTGCTGCGTACCCTGGTGGCGCTTTGCGAAGATGC CCGCATCACCTTTACGGACCTCCCCGCAGTCATCCGCACCAGCCCACCTCCCGTGGGGGCGGGCGAGCCCACGAAGATGTCCGACCAGGCAATAGAGGGC GAGGGCGTTGCCCTCGTTCGCGGGCAAGCCCGGTCCTACAGGTCCGGCGGTGCCGCTGAGATTGTGGGTGAATCTGCAGGGACCGAGGTTCTGCTCGACG CGGAGCGGCAAGCGCTGAAGGAGGTACTGGAGGCAAAACACTGGCATCTCACCCGTGTCGCCGAGCACTTGGGCATCAGCCGCAATACCTTGTATCGAAA ACTGCGCAAACACGGCATTACCAGGGGTGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTTTTGCGAGGTCGACC
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| DNA Sequence for Gene |
>PPUTLS46_023523
ATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACTTGGCCACCGCGTCACCGGCTCCGACGCCAACG TCTATCCCCCAATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTTAT CGGCAACGCCATGTCGCGCGGCAACCCAGCGGTTGAATACGTGCTGAACAAGGGCCTGCCCTACGTCTCCGGCCCGCAGTGGCTGGCCGACCACGTGCTG CAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCT TCCTGATTGGTGGCGTGCCGCAGAACTTCTCGGTGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGACCTGGCCTCGATC GAGCGGCAGTTCCACCACCTGGTGCGGACTATCCCCAGCGAAGGCCTGGTCATCCACCCGACCACCGAGCAAGCGCTGGAGCGTGTGATCGGCATGGGCT GCTGGACCCCTGTGCAAACCACCGGGGAGGGCGGCCAGTGGCAAGCCCGCCTGCTCAGCCCAGATGGCTCGCGTTTTGAAGTCCTGTTCGAGGGCGAAGT GCAGGGTGTGGTGGACTGGGCGCTGACCGGCCAGCACAACGTCGCCAATGCCTTGGCCACCCTGGCAGCAGCGCGTCATGTAGGCGTGGTGCCGGCCATG GGCATCGACGGCCTGAGTGCGTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTTGCCGAAGTACAAGGTGTGACCATCTACGATGACTTCGCCCACCATC CGACGGCCATTGCCACCACGCTCGACGGCCTGCGCAAGCGGGTGGGGGAGGCACCTGTGATCGCGGTGATCGAGCCACGCTCCAACTCGATGAAACTCGG TGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCCGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCG CAGTGCAAGGTACCCAGCGTGGTGGCCGACAGCCTCGAAGCGATCATCGAGCGGATCAAAGGCCAGGCTCGCCCAGGCACCCATGTGGTGATCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCA CTTCCTGATCTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTGACCGAATAC ACCGGCGCGGCCGATGGGCAGATCCGTGTGTATGGCAAGGAAGACTGGATGTCGCCGGTAGCCTCGGGTTCTGGCGCCCCGGCGGCAATGGTGGTGGTCC CCTGTTCCACTGGCACTTTGTCGGCCATCGCCACTGGCGCCTGCAACAACCTGATCGAGCGGGCTGCCGACGTTACCCTCAAGGAGCGTCGCCAGCTGAT CCTGGTGCCACGCGAAGCGCCATTCTCCACCATCCACCTGGAAAACATGCTCAAGCTGTCGCAAATGGGCGCGGTGATCCTGCCAGCGGCACCGGGGTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVVEADEYDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLASI ERQFHHLVRTIPSEGLVIHPTTEQALERVIGMGCWTPVQTTGEGGQWQARLLSPDGSRFEVLFEGEVQGVVDWALTGQHNVANALATLAAARHVGVVPAM GIDGLSAFKSVKRRMEKVAEVQGVTIYDDFAHHPTAIATTLDGLRKRVGEAPVIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPANLGWDLAATAA QCKVPSVVADSLEAIIERIKGQARPGTHVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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