Pseudomonas putida LS46, PPUTLS46_023036
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACCGTTTCATGCGCGCCTACAACAGCGAAAGTGGTGAATTGCTGTGGGAAGAACGCCTACCGGCCGGCAACCAGGCGTCGCCCCTGACCTACGTGAG CGAAGGCCGCCAGTACGTGGTTGCCGTGGTCGGCGGGCATGACCGGATTCCGACCAAGCTGGGTGACAGCATCATTGCCTGGGCGCTGCCGGAGAAATAG CGCTGCCTTTCAGGGGCAGCCATCGGTTACTTCCGCTCCACCGGCCCTCTGTTCGAGGAGTTTGCCATGCCTGGGGGGGCGGGCTATCCGCGAAGCAGCC AGCACGCATTTCACCTGCGCCCCACCCGCAAAACGCTTGCTCAGGCCGCATACCACGCTAACATCAAACCTCTGGAAGATTGATACAGCGCATTCAAGTT GCGGGGTCAGGCAACCGATACACTGCTAACGGTCGGCCGGTAGTGTATCGTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCA
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| DNA Sequence for Gene |
>PPUTLS46_023036
TTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTCGTGCTGCTGTCGGCGTTGGCGGTTGGCGTCGTGCTCAGCTGTGCGCAAATCG TCTATGACACCTACAAGACCCGCCAGGCCGTGGACAACGATGCCCAGCGCATCCTCGACATGTTCCGCGATCCCTCGACCCAGGCGGTTTACAGCCTCGA CCGTGAAATGGGCATGCAGGTCATGGAAGGCCTGTTCCAGGACGAATCAGTGCGCATGGCCTCCATTGGCCACCCCAACGAAACCATGCTGGCAGAAAAG TCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTTACCGACCTCATCCTCGGCCAGGAGCGCACCTACACCACGCAACTGGTCGGCCGTGGCCCTTACA GCGAATACTACGGCGACCTCAGCATTACCCTCGATACCTCCTCCTACGGCAAAGATTTCCTGATCAACGCGGTGATCATCTTCATATCCGGCGTGCTGCG GGCTATGGCCATGGGCCTGGTGCTTTACCTGGTCTACCACTGGCTGCTGACCAAACCGCTGTCGAAGATCATCGAGCACCTCACCCAGATCAACCCTGAC CGCCCCAGCCAGCACCAGATACCGCTGCTCAAGGGCCACGAGAAAAACGAACTGGGCCTGTGGGTGAACACCGCCAACCAGTTGTTGGCCTCGATCGAGC GCAACACCCATCTGCGCCACGAGGCGGAAAACAGCCTGCAACGCATGGCCCAGTACGACTTCCTTACCGGCCTGCCCAACCGCCAGCAACTGCAGCAGCA ACTGGACAAGATCCTCGTCGACGGCGGCCGTCTGCAGCACCGTGTGGCAGTGCTGTGCGTTGGCCTGGACGACTTCAAGGGTATCAACGAACAGTTCAGC TACCAGGTCGGTGACCAGTTGCTGCTGGCCCTGGCCGATCGACTACGCGCCCACAGCGGCCGCCTGGGCGCTCTGGCGCGGCTGGGCGGCGACCAGTTCG CCCTGGTACAGGCCAATATCGAGCAGCCCTACGAGGCTGCCGAACTGGCGCAAAGCATCCTTGATGACCTGGAAGTACCGTTCGACCTCGACCACGAGCA AATCCGCCTGCGCGCGACCATCGGCATCACCCTGTTCCCCGAAGACGGTGACAGCACCGAAAAACTGCTGCAGAAAGCCGAACAGACCATGACCCTGGCC AAGGCCCGCTCGCGCAACCGCTACCAGTTCTATATCGCCAGCGTCGACAGCGAGATGCGTCGCCGTCGCGAACTGGAAAAGGACCTGCGTGAAGCCCTGC CCCGCAACCAGCTTTACCTGGTGTATCAGCCACAGATCAGCTACCGCGACCACCGGGTAGTTGGCGTAGAGGCCCTGCTGCGCTGGCAGCACCCGGAACT GGGCATGGTGCCACCCGACCAGTTCATCCCCCTGGCCGAGCAGAACGGCAGCATCATCAGCATCGGCGAATGGGTGCTTGACCAGGCCTGCCGGCAACTG CGCGAATGGCACGACCAAGGCTTCAGCGACCTGCGCATGGCGGTCAACCTGTCTACCGTGCAACTGCACCACAGCGAGCTGCCACGGGTGGTCAACAACC TGCTGCAAGCCTATCGCCTACCACCGCGCAGCCTGGAACTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCACCTGTTGAG CCTGCGCCGCTCCGGGGCGCTGATTGCCATCGACGACTTCGGCACCGGCTACTCGTCCCTCAGCTACCTGAAGTCGCTGCCACTGGACAAGATCAAGATC GACAAGAGCTTCGTTCAGGACCTGCTCGACGATGATGACGACGCCACCATCGTTCGCGCCATCATCCAGCTGGGCAAGAGCCTGGGGATGCAGGTCATCG CCGAGGGCGTGGAGACGGCCGAGCAGGAAACCTACATCGTTGCCCAGGGTTGCCACGAGGGCCAGGGCTACCACTACAGCAAGCCCCTTTCGGCCCGTGA ACTGACCCACTTCCTCAAACAAGCGCAACGCAACCGGGTTTCGGTGTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCACCTGCCCGGTTACAGGCCGTGCCCCTGATTTACATGAATTGCGCGCCCGCCCCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGTAGTTTTG CGTGCCACGGCGCACGGTCCACCCCTTTGGTCCAACCACACGATGCAGGAAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCAT TGCCATCGCCCTCGCCGGTTGCGGTGAAGGCAAGGACGAAAAAGCCGCCGCGCCGCAAGCCCAGGCACCTGCTGCCGCCACCACCGCTGTTGCGCCAGGG GCTGTCGACGAAGCCGCCGGCAAAGCCGTGGTCAAGCATTACACCGACATGGTCTACGCCGTGTACAGCGACTCGCTGAGCACTGCCAAGACGCTGCAGA GCGCAGTCGACGCGTTCCTGGCCAAGCCCAACGACGAAACCCTGAAAGCCGCCAAGGAAGCCTGGTTCGCCGCGCGCGTACCGTACCTGCAGAGCGAAAC
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVDNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEK SRPLQDMSMRWLTDLILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGKDFLINAVIIFISGVLRAMAMGLVLYLVYHWLLTKPLSKIIEHLTQINPD RPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFS YQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQL REWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTHFLKQAQRNRVSVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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