Pseudomonas putida LS46, PPUTLS46_020311 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATCGGCGACAACCTCGATGTGTTGGTGATCGATACCGCTGCGGGTATCGGTGACTCGGTGGTCAGCTTCGTTCGCGCCGCCCAGGAAGTGC TGCTGGTGGTGTGTGATGAACCTACCTCGATTACCGACGCCTACGCGTTGATCAAGCTGCTCAATCGCGACTATGGCATGAACCGTTTCCGTGTGTTGGC CAACATGGCGCAGAGCCCGCAGGAAGGGCGCAACCTGTTTGCCAAGCTGACCAAGGTCACCGACCGCTTCCTCGACGTTGCCCTGCAGTACGTGGGTGCC GTGCCGTACGACGAGTGCGTGCGCAAGGCGGTGCAGAAGCAGCGTGCCGTCTACGAAGCCTTCCCTCGCTCCAAGTGCGCGCTGGCCTTCAAGGCGATTG CCCAGAAGGTCGACAGCTGGCCGCTGCCGGCCAATCCGCGCGGCCATCTGGAGTTCTTTGTCGAGCGCTTGGTGCAACCCACCAGCGCGGGACCCGTACT
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| DNA Sequence for Gene |
>PPUTLS46_020311
|fliA
ATGAACGCCAGCGGCTTCAAGATGTACAGCCGGGCGGCAAAGGACGCCCAGTACGAGCTGATCGAACGCTACGCCCCGCTGGTCAAGCGCATCGCGTACC ACCTGTTGGCGCGCTTGCCGGCCAATGTGCAAGTCGAGGACCTGATCCAGGCCGGCATGATCGGCCTGCTGGAAGTGGCCAACAAATACGACGCCAGCAA GGGCGCCAGCTTTGAGACCTACGCCGGCATCCGCATCCGCGGGGCCATGCTGGACGAAGTGCGCAAAGGCGATTGGGCACCGCGTTCGGTACACCGCAAC ACCCGTATGGTCAGTGATGCCATGCGTGCAGTTGAGGCCAGAACAGGCCGTGACGCTAAAGATCATGAAGTTGCTGCCGAACTCCAATTGAGTCTCGATG ATTACTACGGGATCTTGAACGATACCCTGGGCAGCCGCCTGTTCAGCTTTGACGACCTGTTGCAGGACGGCGAGCACGAAGGGCTGCATGAGGATGGCGC CAGTGGCCAGGTCGAACCTGCGCGCGGCCTGGAGGAGGAGCGCTTCCAGGCTGCCCTGACCGAGGCCATCGCCAACCTGCCGGAGCGTGAGCGCCTGGTG CTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGTGAGGTGCTGGGTGTCAGCGAGTCGCGGGTCAGCCAGTTGCACAGCCAATGTGCCG CGCGCCTGCGCAGCCGCCTGGGGGAATGGCGGGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCACTGTCGTTGCAGTCGTTTTCCACGTTGTACCGAATTGAATGAGTGCGTGCTCGGTAGGCCGAGCGCGTTTGAGACTGCTTGGAGGTCTAATTGGA CAAGAACATGAAAATCCTCATCGTTGACGACTTTTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGACCTGGGTTTCACCAACACCGACGAAGCC GATGACGGCACCACGGCGTTGCCGATGCTGGAAAACGGTCACTACGACTTCCTGGTGACCGACTGGAACATGCCGGGCATGTCCGGCATTGACCTGCTGC GTAAAGTGCGTGCCAGCGACAAGCTGAAAAGCATGCCGGTCTTGATGGTGACCGCTGAAGCCAAGCGCGACCAGATCATTGAAGCGGCACAGGCCGGCGT CAATGGTTACGTGGTCAAGCCGTTCACCGCTCAGGTGCTCAAAGAGAAGATCGAGAAGATCTTCGAACGCGTCAACGGCTGAGTCACGTCAGGGGGGCGC
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| Amino Acid Sequence |
>RNA polymerase sigma 70
MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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