Pseudomonas putida LS46, PPUTLS46_018606
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCAGCGCTGTTCACCTTGCCACTGTCGTTCGTCACCGGCCTGACGGGGTGCATCATGCTGCTTTGCCTGGCGCTGTTCAGCATCAATATGGCCAGTG CCACCGCCTGGATGATCGTCAACACCATTGTCGACAGCCAGCGCGTGGCCTCGTTTGGCTCGATCCAGAACTTCGGCGGTTACATCGCAGGCTCGGTGGC ACCGATCGCGACGGGCTTCAGCATCCAGTACTCGGGCTCGTTCACCACAGCGTTCATGATCAGCGCGGTGGTGGCGCTGTGCTCGGCGGTGGCGTACTTC CTGCTGCTACAGGCACCCATTGGCAGTGCCAAGGTCGAGGCAGGCGGGATGGCTGGCGCAACTGAACAGGCGTGAACGCTACGGGGGCTGCAGTGCAGCC CCTGAACCCTTGGTTGATTGTGACGCGACCCGCGGCGCTTGTCATGGAGGGGTATCTGTATGTATAAACAGTGCCTGTTGCCGCCATCTGACTTCCGCCC
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| DNA Sequence for Gene |
>PPUTLS46_018606
GTGATCGCCCATTCCGTCGACGACCCGTTCTACTACCTGCATAACTTCCGCCAGGTCGTGCTGTGGGTCGAACAGCGCTACCAGGACCTGCTCGATGACC AGGAACTGGCCTTCATCCGTGCCTTCAGTCAACTGCAAGCGCCAGCCCAGGCCTTGATGGTGCGCATGGTGATGCGCAAAGGCGAGTTGTTTCGCAGCGA TCGGCTCGACTACGCCGAAATCGGCGATACTGCACTGGCGCTGCAGCCGTTGCTGGCCCTCGGCTGGGTACGGGAGCCCGAGCAACTGGACCTTGAACAG CTGTTCGCGTTGCTGCGCAAGGAAGAACTGGCCCGCTGCTTCGCCCGGCAACTGAACCGCCCGCGCGCGGCCAAGCATGAGTTGTTGGCACAGCTGCAAC CCCTGGCGCTGGCAGCCCGGTCACTGGTCGAGTGGTTTCCTGACAGCGAGGTGCGCATCCTCCAGTGGTGCCTGCAACCTCTGTGCGACCGCATGCGCCT GCTGTTCTTCGGCAACCTGTACCAGGACTGGTCAGACTTCGTCCTTGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCTCCGATTCGCGT GCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCAGTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCC TGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAACGCCTGGGTGAATGGGACCT GGCCACGGCGGTGTATGCGCAATGCAACCATCCCCAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCACCGAACAGTGGCACCAGGCCCATGCACTG GCGGTGCAACTGGCTGCGGCACCTGCCAACGCGCTGGAGGTGCAGGCGCTGCAGCGCATGCTGCCACGCCTGGCGCGCAAACTCGGCGGCCCGCCACAGC GGCGCCAGCGCACCACGCCGCTGGAACTGATCGAGCTCGAACTGCCCCGCGGGGACGCTGCACTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCA AGAGGGGGGGCAGGCGCATTACGTGGAAAACACGCTGTTCAACAGCCTGTTTGGCCTGTTGTGCTGGGAGGCCATCTTCGCCCCGGTGCCCGGCGCATTC TTCAACCCGTTCCAGGCCGCGCCACAGGACCTGCACGACAGCGACTTCCAGCAACGGCGCAGTGCACTGTTCGAACGCTGCCTCGGGAGGCTCGACGAGG GTAGCCATCGGCAGGCGATTCTCGACTGCTACGTGGCCAAACAGGGGCTGCAGTCGCCGTTCGTGTTCTGGTCCATGCTCAGCGAGGAACTGCTGGAGCA GGCCTTGGCTTGCCTGCCGGCCGCGGCGCTCAAGCAATGTTTCCTGCGCCTGTTGCAGGACATTCGCAACAACCGTACCGGCATGCCCGACCTGATTCAG TTCTGGCCCGAGCAGGGCCGTTATCGCATGGTCGAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAATCAGCTGCGCTGGCTGGAGTTCTGCAGGCAGC ACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTACAGCGTAGCGGTGCGCGCCTTGTGTGAGTTCAGCGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCCACCGCCCAGGAGGGTATCGA AGGGCATCAGCGGGTGGTGGCACGGCGGGCTGCTGGCTACGAGTCGGAAATCGCCCTTGAAGGCCAGTTCGAAACCCTCAGGGTGCGGGGCCGCGCCGAT GGCTATGACCCTGGCAGCAATCGCCTGGAAGAGATCAAGACGCACCGTGGCGATCTGGCGCGTCAACCGGCCAATCACCGTCAGTTGCACTGGGCGCAGG CCAAGGTCTATGGCTGGTTGATGTGCCAGGCACGACAACTGCCCGCCATCGAGGTGGCGCTGGTGTACCTCGACGTGGACAGCGACAGCCAGACGCTGTT CACGGAGCACTGTTCGGCTGCCGAGCTGCAGGCCTTCTTCGAAACCCAGTGCCAGCGCTTTCTGGGCTGGGCCCGATCGCAGCAACGACGCCTGGCCGAC
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| Amino Acid Sequence |
>nuclease
MIAHSVDDPFYYLHNFRQVVLWVEQRYQDLLDDQELAFIRAFSQLQAPAQALMVRMVMRKGELFRSDRLDYAEIGDTALALQPLLALGWVREPEQLDLEQ LFALLRKEELARCFARQLNRPRAAKHELLAQLQPLALAARSLVEWFPDSEVRILQWCLQPLCDRMRLLFFGNLYQDWSDFVLADLGLLRYEQVPFSSDSR ALQQRDDVDLAMALHQCAERLEQGGDPLPILATLQGLHSSNPWLARRHARLQFAVGQQCERLGEWDLATAVYAQCNHPQARIRQVRVLERTEQWHQAHAL AVQLAAAPANALEVQALQRMLPRLARKLGGPPQRRQRTTPLELIELELPRGDAALGVEEAVRQHLMQEGGQAHYVENTLFNSLFGLLCWEAIFAPVPGAF FNPFQAAPQDLHDSDFQQRRSALFERCLGRLDEGSHRQAILDCYVAKQGLQSPFVFWSMLSEELLEQALACLPAAALKQCFLRLLQDIRNNRTGMPDLIQ FWPEQGRYRMVEVKGPGDRLQDNQLRWLEFCRQHGLPVAVCHVRWSETP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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