Pseudomonas putida LS46, PPUTLS46_017529
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCGCTCCTTCATCTCGCGCGCAGCCTTGTTGGTGAAGGTCATCGCCACGATGTACTGGGCGCGGATGCCGCAGTTCTGGATGAGGTGGGCAATCTTGC GCGTGATCACGCTGGTCTTGCCCGAACCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACATAGTCACGGGCTTCCTGCTGCCGGGGATTGAGTCGGGA CATGCTAGAAACCGGGGGTCGCCAGAAAATAGCCGCGCATTCTAACAGGCATGGGGCCGTTGTGGCGCGACCGTCTGACGTTTGAGTCAGACTTTTGTCC GCCTAATTATTAGTGTCACTAATGCTAGTAGCTGAAAAAATCATATTTGCCGGTTTGACTCGTTTCGCGCAGGATGCACGACAAAATACGTCGGAATGCT ACGCTCGAAAAAACCATGTATAAAAGTGAAAATCATTTTCATTGAATGCAGTAGCATCCCCTCCAGATCTCGTTGCACCGTCAAGCCCTAAGGAGCCCGC
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| DNA Sequence for Gene |
>PPUTLS46_017529
TTGTCCACGCCTGTCGAACCTTTGCGTTTGCTGCTGTTGGCCGATGAGCCGGAATGGGCTGCCTCGTTGCACGCGTGCATGCCCGCACTGGGGGGCAGCG CCGTGTTACTGACTGCGCCAAACTGGGAGGCGGTCGACAGCCTGTTCAGCCATGATCGCCAGGCCGTCGTGCTGGCAACACCCGCCTTGCAGCCCGCCCC CGGGCGTTGCGAGCTGCCGACTATTCTGCTGCTTGAACACGAGCCTGAGGCAGCGCCCAGCGCTGTCAGTGACTGGCTGGTGCGCGACCAGCTCAACGCC GATACCCTGCGCCGCTCACTGCGCCATGTGCGAGAGCGAGGGGTGCTGGTCGCCACCTTGCAGCGCCTTGCCGAGCAGGACCCGCTGACCGGCATCGCCA ACCGCCAGGGCTTCCAGGCTTTGCTTAATGCACGCCTGGCCGAAAACGAAGGCCGTGGTGTCGCGCTTGGCCACCTGGACCTGGACAACTTCCGCCACGT CAACGACGCCCTGGGCCACCAGAGCGGTGACCGGTTGATCCTGCAGGTGGTGGCACGGCTGAAGCATCAGCTGGAGGCGGGCGACCAGCTGGCACGTCTG GGTAGCGACGAGTTCGCCCTGCTGATCGACACCCGTCGCGATGCCAACCGCGCCGAATGGATTGCCGAACGCATCGTCGAGGCCTTGGCAGAGCCCTACT GGATCGACGGCGAAAGCCTGCTGCTGGGCTGCAGCCTGGGCCTTGCACATGCTCGCGCGCAGAGCGGCGCCGATCCGCTGATGTGGCACGCGCACATCGC CATGCGTCAGGCCAAGGGCAGCCAGGGCTGCACCTTCCATGTGTTCAACGAACGCATCAACCGCAACGCCCGCAGCCTTGCTGACCTGGAAAGCGAGTTG CGCCGCGCCCTGCGCCGCGACGAACTGGAGCTGCACTATCAGCCCCGCCTGAACCTGGCTGACGGGCGCATTGTTGGCCTGGAGGCGCTGGTGCGCTGGC GCCATGCCGAGCGCGGGCTGCTGCCACCCAGTGAGTTCGTGCCACTGGCCGAGCAGAGCGGCCTGATCGTGCCCTTGGGTTATTGGGTTATTTCCCGTGC CCTGCGTGACATGCAGGCATTGTGCGAGCGTGGCCTGGAACCGCTGCACATGGCGGTCAACCTGAGTTTCCGCCAGTTCCAGGACAGCCAGCTACTGGCC ACGTTGAGTCGCCTGATCCTCGAGCACGGTGTGGATGCCCGCTGGCTTGAGTTCGAGCTGACCGAGACGGCGGTGATGCGCCGCAACGAGGTGGTGCGCC AGACCATGGACGCGCTGGGTCGCCTGGGCGTGCGCTTCTCCCTCGATGATTTCGGCACCGGGTTTTCTTCGTTCGTGCACCTCAACAGCCTGCCGATCAC CTTGCTCAAGGTGGACCGCAGCTTTGTTGCGGAAATGGAAATGCGTGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAAC CTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAACTGGCGTTGCTGCGCGGGTTTGGCTGCGACCAGGTGCAGGGTTTTCTGGTCAGCAAACCGC TACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCCGGACGCCAGTTGGAGGCTGTCCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCGGGTTTACCCGCGAATGGGCCGGGCCTGCTGGCCAATCTCCACCAGACGTTCACTGTTGCCGCCACCACCGTATTCGCGGGCAAGCCCGCTCCTAC ACACTGATCTGCGGTGGACACACACACCGGGGTTGGACACAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCCCACGTCAGGCCGAAGCCGTCG CCTTCCCGGCAGCCCAAGCCTTCCCCAACAACCGCTTCATCCGCCACTCAAAGCCAAAGGTCAGCGCCACCGCCGCACATGCCAGCCCCAGCGCCAGCCC CCACCAGATCCCTACTGCACCACCACCCAGGGTAAAGGTGAACAGCCAGGCACTCGGCGCCCCCACCAGCCAGTAGCACACCAGCCCGATCAGGAAGGTG GTCTTGGCATCTTTCAGGCCACGGATCGAGCCCATGGCAATCGTCTGCATGCCGTCGAACAGTTCGAACCACGCCGCCACCATCAACAACTGCACGGCCA
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLADEPEWAASLHACMPALGGSAVLLTAPNWEAVDSLFSHDRQAVVLATPALQPAPGRCELPTILLLEHEPEAAPSAVSDWLVRDQLNA DTLRRSLRHVRERGVLVATLQRLAEQDPLTGIANRQGFQALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQSGDRLILQVVARLKHQLEAGDQLARL GSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGESLLLGCSLGLAHARAQSGADPLMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLESEL RRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLA TLSRLILEHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLN LEVVAEGVESEEQLALLRGFGCDQVQGFLVSKPLPIGELMAYLLQAPGRQLEAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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