Pseudomonas putida LS46, PPUTLS46_016474
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCGGGCCGCTGCCTGGCAACTTCCCACGGCGCAACCGCATCATCAGTGGCCTGTCGCTAGGTGTACTGGTGGTTGAGGCGAGCCTCGCCAGCGGCTC GCTGATCACGGCGCGCCTGGCCGCAGAGCAAGGCCGTGAGGTGTACGCCATTCCGGGCTCCATTCATCACCCGGGGGCCAAGGGCTGCCACCAGCTGATT CGTGATGGGGCGCTGCTGGTGGAAACTGTGGAGCAGATCCTGGAAAGCTTGCAGGGTTGGCAGAACCTGCCGCCTGCGGTTGTGGACAGATTCGACCACC CCCTGCTCGCCCTGCTGCATGCCGCCCCCCAGACCAGTGAAAGCCTGGCCCACTGCAGCGAGCAGCCGCTGGCCGACGTGCTGGCGCAGTTGACCGAGCT GGAGCTGGAAGGCCGGGTCAGCAATGAAGCCGGGCGTTGGTTTGCCCGCGCGGGCTAAGTACACTGCGCACAAGCAAGGTATTCAGGCGGAGAAACAGCA
|
|
| DNA Sequence for Gene |
>PPUTLS46_016474
ATGGTGAGCAGTTTTCGTGTGCAACAAGCCGCACGTGAGATCCGGGCAGGCGCGGTGATTGCCTACCCGACGGAAGCGGTCTGGGGCCTGGGCTGCGACC CATGGAACGAGGACGCGGTGTATCGCCTGCTGGCGCTGAAGTCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAACATCCGTCAGTTCGACTT CCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGGGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCACCAGGACCTGCTGCCCGAG TGGGTGACCGGGCAGCATGACACGGTGGCGCTGCGGGTCAGTGATCACCCGGTGGTGCGTGAGCTGTGCGCGCTGGTGGGGCCGCTGATTTCCACCTCGT GCAACCCCGGCGGGCGCCCAGCGGCGAAGACCCGCTTGCGGGTTGAGCAGTACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGTGCGCTGGGCGGGCG GAAAAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACCTATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCTGGCACGGGCTTCGCCCGTGTTC GTGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGA TTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGATAGAAACAAGCCAAAAAATAAAGGCCGCTTAAGCGGCCT AAATGGCGGGGATGCACTCGCCCGGATAACTTGAAACTCAACCGGCGCACCAGCACTTCCTCAAGCAGAAATGCTACGTTTCCGAATCTGTACGGTCAAG CCGGGATCTTTTTCTCGCGTGCTGTAGATGGGCCTTCTGTGGCTTTCTAGGTGATCAGGGTTTTCTGATTATTGCCAAAATGTCTGTCCAGCTGGGCACT
|
|
| Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPE WVTGQHDTVALRVSDHPVVRELCALVGPLISTSCNPGGRPAAKTRLRVEQYFHGQLDLVLGGALGGRKNPSVIRDLATGEVVRPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|