Pseudomonas putida LS46, PPUTLS46_007301
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig08, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTCATCGATCGCCGCTTGCCGGTGCTGCTGACCCCTTGAACCAGATGCCCTGGCTGTCTTCGTGGCAGCCCAGGGGCTGCAACTGCTCACCCTCACA GGGGCCTGCCACGCATTCGCCGCTTTCTATCAGGAACAGCGCACCGTGATGGGCGCAGTGGATGAGGCTGGCGCTGTCATCCAGAAACGCGTCCTCTGCC CAGTTCAGCGGGATGTCCCGGTGTGGGCAGCGGTTGCGGTACAGGTACACCTGGCCTTGGCGACGCACGCCGAACAGTTCGAGGCCGTCTACGCTGAAGG CGCGGCTTTGGCCCTCGGCCAGGCCGAGGGATGTACAAAGGAAGTGCATGGCAAGGATGACCCGTGAAACACGTGATGGCTTGACGCTCCAATGCGAATA ATTATCAAATTGATCGCATTCGCTGCGCCTGGCTGCCTATGGTGCGCAGTTCCGCTGCTCGCCACAAGGCGTGTAGCCCGTCTTCAGAAGGAACCCGATG
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| DNA Sequence for Gene |
>PPUTLS46_007301
ATGCGCCGTCCAGCTGCTTTTCTCGCTCTGTGTGCAAGCCTTGTGCTCTCTACCCAAGCCTTGGCAGCCGAGCTGCCACAACGCTGGGTCAGCGCGGGTG GCGCCTTGAGCGAGTGGATAACCGCATTGGGGGGTGAAGCGCGCCTGGTCGGTGTGGACACTACCAGTCAGCACCCGGCCTCGTTGAAATCGTTACCCAG TGTGGGTTATCAGCGACAACTGTCGGCCGAGGGTATTCTCAGCCTGCGACCGGATGTGCTGGTGGGCACCGAGGAAATGGGGCCGCCACCGGTATTGGCG CAAATCCGCAAGGCCGGCGTGCGGGTCGAGTTGTTCTCCAGCAAGGCCGAGCTGCCGGCAGTAGATGAAAACCTCAGGCACCTGGGGCAGTTGCTCGGTG CAGAGCAGCAAGCGTCCGCGCTTGCAGCGGACTACCGCCAGCGGCTCGATGCGTTGCAGGCCAACGTCAAGCTGGCCCAGGCCGGGCAGCAGGCTCCCGG GGTGTTGCTGCTGGTCGGCCATGCCGGGGCCAAGCCGCTGATCGCCGGGCAAGGCACTGCCGGTGACTGGCTGCTGAGCCAGGCGGGTGGGCGTAACCTG GCCGCGCACCCAGGCTACAAGAACTTCTCCAACGAAGCGTGGGCGGCGCTTGACCCGGATGTGATCGTGTTTTCCGACCGAGCGCTGGCCGATGAACAGG CCTTGCAGGCGCTGTTGAAAGAAAACCCCGCGCTGGCTGCCTCGCGGGCCGTGCGTGAGAAACGCCTGGTCTCCTTGGACCCGACGCTGCTGGTCGGCGG GCTCGGGCCTCGGCTACCGGCGACCTTGCAGTCGCTGGCAGCCACCTTCTACCCGGCTGCTCAGGCCAGCTTCGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACAGCGGGTCTCGCCACGTACGTTGTTCATTAGCCTGAGCCTGCTGTGCCTGTTGGCGATCTGGCTGTCACTGGCGCTGGGGCCAGTCAGCCTGCCAAT GTTCGATACCCTGCGCGCTGGCCTGCGCCTTTTGGGGCTGCCCGTTTCCGAAGATGGCCTGCAGCAGGCCGAGATGATCCTTGGCCAGATCCGTCTGCCC CGTACCTTGTTGGGGTTGGCGGTGGGCGCGGTGCTGGCGCTGTCCGGGGTGGCGATGCAGGGGCTGTTCCGCAACCCGCTGGCCGACCCCGGGCTGGTAG GGGTTGCCGCCGGCGCCGCGATGGGGGCAGCGGTTGCCATTGTTGGCGGCGCCTGGTTTGGCGGCATGCCGGATGCTTTCGCGCCTTATCTGCTGTCGTT CTGCGCGTTTGTCGGCGGGCTTGGTGTAACTGCGCTGGTCTACCGCCTGGGGCGCCGCGATGGCCAGACCAACGTCGCCACGATGCTATTGGCTGGCGTG
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| Amino Acid Sequence |
>periplasmic binding protein
MRRPAAFLALCASLVLSTQALAAELPQRWVSAGGALSEWITALGGEARLVGVDTTSQHPASLKSLPSVGYQRQLSAEGILSLRPDVLVGTEEMGPPPVLA QIRKAGVRVELFSSKAELPAVDENLRHLGQLLGAEQQASALAADYRQRLDALQANVKLAQAGQQAPGVLLLVGHAGAKPLIAGQGTAGDWLLSQAGGRNL AAHPGYKNFSNEAWAALDPDVIVFSDRALADEQALQALLKENPALAASRAVREKRLVSLDPTLLVGGLGPRLPATLQSLAATFYPAAQASFAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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