Pseudomonas putida LS46, PPUTLS46_006121 (motB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig08, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCATGACCGCGTTCGTCTGCGATTACCTGCGCATCATGTCCACCGGCAACATGGCCCCGCACGAGCTCGAGGGCCTGTTCGACATGGAACTGCTGAG CATGAAGGAAGAGCTGGAGCACCCGTCCCACGCGGTGACCGGCATCGCCGACGGTATGCCCGGGTTCGGTATCGTTGCGGCGGTACTGGGTATCGTGGTG ACCATGGCCTCGCTGGGCGATGGCGATCAGGCGGCCATCGGTATGCACGTAGGTGCGGCGCTGGTGGGTACCTTCTTCGGTATTCTGGCGGCTTACGGGT TCTTCGGCCCTTTGGCCAAGTGCCTTGAGCACGATGCCAAGGAAGAGCTGAACCTCTACGAATCGATCAAGGCTTCGCTGGTGGCCTCGGCGTCGGGCAT GCCACCTTCGCTGGCGGTCGAGTTCGGGCGCAAGGTGCTTTACCCCAAGCACCGCCCAAGCTTCGCCGAACTGGAACAAGCGGTTCGCGGTCGCTGAGTC
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| DNA Sequence for Gene |
>PPUTLS46_006121
|motB
ATGGAGAACAATCAGCCCATCATCGTCAAGCGCGTCAAGCGCTTTGGCGGCGGCCACCATGGTGGCGCCTGGAAAATCGCCTTTGCCGACTTCGCCACGG CGATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCATTGCCGGCTACTTCCAGGACCCTATTGGTTTCTC CGAGAGTGGCACGCCTTATGTCATCGACCTGGGGGGTTCCCCGGAGATGGCGCCGGACAAAACGATCAATCCGGAAGTGAAGACCGAGCCGACGCAGCAG TCCCCCACTCAGCTGAACAAGGACCAGGTCGAGACCATGGCCGAGCAGGTCGAGCGCGAGCGTCTGGAGCTGTTGCTGCAGGAACTGCAGAACAAGGTGG AAGAGAACCCGCAGCTGCAGAAGTTCAAGGACCAGATCCTGTTCGAGATCACCCAGGACGGCCTGCGCATCCAGATCATGGATGCTGAGAACCGACCGAT GTTCGACATCGGTAGCGCGCGCCTGCAGCCTTACTTCGAAGATATCCTGCTGGCCATGGCCGACACCATCAAGGCGGTGCCGAACAAGATCAGCATCAGC GGCCATACCGATGCCAAGCCGTATGCTGGCACTGGCGAATACGGTAACTGGGAGCTGTCGGCCAACCGCGCCAACGCCGCGCGGCGTGCCTTGGTGGCGG GTGGTTACCCGGACGGCCAGGTGGCACGGGTGGTGGGGTACGCCTCGTCGTCACTGTTCGACCGCAAGGACCCGTTCAACCCGGTCAACCGCCGTATCGA CATCATCGTGCTGACCAAGAAAGCCCAGCGCAATATCGAAGGTGAGCAGGGTGCGCCGGAAACACCGCCAGCTGCGCCAACGGCACCTGCAGCGCCAGCC AGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCCAGGGGCAACTGAACAGGCACCGATGCAACCGCGCGAGCTGCGCCAGAAGCTGAACATCTTTG AAGATGGCACGCTGAAGATGGATGAAGCCAAGGATCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCTTTTTGGGGTGGGCAACTGTGCTACCCACCACCTGAACGCTGGCGCGATCACTGTAGGAGCGGGTTTACCCGCGAAGCCGCCAGTGCGGTGAATG GCACCGGCGTTGCCGGTGTTCGCGGCTAAAGCCGCTCCTACATACGCATCAGTGATTGGGCGCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCC GGACCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCAGTCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAAGGGGGGGCGCGGCAACTTTCATT TCGAGCGTTTCAGTAGCTGTCTTCTGCCAGGCTGGCGATGATCGAGCGGTAGCTGTTCATGCGCTGCGGCTTGATCCGACCCTCTTCCAGTGCCTTGAGC AGCGCGCAGCCCGGTTCGCGGTCATGCTTGCAGTCGCGAAAGCGGCAGGTGCCGAACAGGTCGCGGAACTCGATGAAGCCATCCTCCACGTCGTCGCGGC
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| Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIVKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFQDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQ SPTQLNKDQVETMAEQVERERLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISIS GHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKAQRNIEGEQGAPETPPAAPTAPAAPA SGAAPGASAPADPGATEQAPMQPRELRQKLNIFEDGTLKMDEAKDQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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