Pseudomonas putida LS46, PPUTLS46_003557
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGACCCTGGAACACAGCGGCCAGGTCATCCGCATCACCAGCCCGACCCGCTGGGTTGTGGGCTTCCACGCCTTTGACCTGGCGCGGTTTCGCAATGTC ATCAAAGACCCCAACCGCAGCAGCGCCGAGCTGTACCGCTTCGTGGTGCACTACCTGGTGCTGTTCTACTGCCTGAGCAAGTCGCCTGGCCTTGGGCGGC TGTTCGAGGGCTTGCGCTACGGCCTGAGCTTCGAGCGCCTGAAGGGCTTTGGCGACCTGCCGTTCTGCGTCATCAGCTCGCCGGTGCGCTCGGAACTTCC CGACGACTCGGTCATCCGCAGCAGCACGCAGATTGCCGGCAACACCAGCTTCGAAGAACTGGTAGGCCGCGACAACATCCTGGAAATGAACGACGAAATC CGTCAGCGCCTGCTGCTGACGATCGAAGGACTGTAACGCGCAGCGCCCGGCACCGGGCAGCGCAATGATTCGCAGCGAATTGCTCGCACTGGAGAACACG
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| DNA Sequence for Gene |
>PPUTLS46_003557
ATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTTCGCGCGCCTCGGGTCCATATCACCTACGACGTGGACATCGGCGATGCCATCGAGAAAA AGGAGCTGCCCTTCGTCGTCGGCGTACTGGGTGATTTCTCCGGCAACCCGCTGGAGCCGCTGCCCAAGCTCAAGGACCGCAAGTTCGTGTACATCGACCG CGACAACTTCAACGGTGTGCTCAAGGGCATCAAGCCACGCCTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGTACCCAGCTGGGCGTGGAACTG AACTTCAATAGCCTCGAAGACTTCGAGCCACAGAACGTGGTCAAGCAGGTCGAGCCGCTGCGCAAGCTGCTGGAAGTGCGCAACAAGCTGGCCGACCTGC GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGATGTGCTGCAGAACACCGAAAAGCTCAAGACCTTGGGCAAGGAATTCGGCCGTGA AGCCGAAGTGAAAGACCCGTCCAGCGACGATCGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGGAGCCCGAACATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCACCACAGCCCTCGCTGCTCGACAG CATCATTTCGCAAAGCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGGTGAACCAGGTGCTCGAGGGTGAGATG ACCCCGAGCAAGGACCTGATCGCCGTGCTCGATTCGCGCATCGCCGAGATCGACGCGATGCTCTCCGAGCAGATGAACGAGATCATGCACGCCCGCGAGT TCCAGCAGTTGGAAGCCTCCTGGCGCGGCCTGAAATACCAGGTAGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAA AGACCTGGTGCGCGACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCACTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCACCT
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| Amino Acid Sequence |
>type VI secretion protein
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVYIDRDNFNGVLKGIKPRLTYRVDNTLAKNGTQLGVEL NFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAEVKDPSSDDRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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