Pseudomonas putida LS46, PPUTLS46_000917
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida LS46 Contig02, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGAGTGCACTGAAAGGACTAACTTTACCCCTGTCCTCATTAGCACTTGCACCGCAAGAAGGTAGTTTCAAATGTCCAACAGTATGGGTATTGCCAGCGT CTTCGTCCTGTCTTCCCTGTTGTTGTCGCCCCTGGCCATGGCCGAAGAATCCCCGGCTTTCGTTACCCGTAATGCAGCGTTCGCGGCGGTCCATCAAGAG GCCCGTGAGGCTGTTGCCGCAAACAAGGCAGATACCGCAAAAGACGCGAAACAGACAGCTTCCAAAGTGAACGTCGATGCCAATGCCGACAGCTGATCAA ACGCTGTCGCTGTTCCTTCTTTCCCTTGGCTACGCCATGGGCACCTCCGGTGCCGATATGTTAGCCTTTTAAAGCCGCTGCCGATCAGCGGCTTTTTTTA TGTGCTTTAACACTCAGCCCGGCTGTAACGTGTACCTATAAAAAGACGCACATTCAAATATAAAAACTGCCCCACCGTCAGACCAAAGGAGCTAGTACCG
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| DNA Sequence for Gene |
>PPUTLS46_000917
GTGCCTTCCGCGTTTCGTTTTACCCCGCTTTTCATTGCGTTGACTGCAACGATCCCTTTCGCCGCCCAGGCAGATGAAGACAAGGCTGATGGCTTCATCG AAGGTTCGTCCTTCAACCTGCATTTTCGTAATGCCTACTTCAACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAAGGCGCGGT AGCGCGTTTCGAGTCGGGCTACACCCCAGGTGTGGTCGGCTTTGGCCTGGATGCTCATGCCATGCTGGGCCTGAAGCTCGACGGCGGTGGCGGCCATGCC GGCACCAGCATCCTGCCCGAACACATCAAGGACGACGGCGAACTGGGCGCTGCCCCGCATTCGTTCTCCACTGCCGGTGCTGCGGTCAAGCTCAAGGCCT TCGACACCGAACTGAAAGCCGGTGACCTGTTCCTCACCAACCCGGTGATCGCCGGCGGTGAAACGCGCATGCTGCCGCAAACTTTCCGCGGTGTAAGCCT GACCAACACCAGCATTGATGGCCTGTTGCTCGAAGGCGGCCAGGTCAGCTTCACCCACCCGTACAACCAGAGCGGCCACCGCCGCATCGACACCTACTAC GGGTCACTGGACGAGCACGACAAGAGCAAGCACCTGAACTGGGCCGGCGCGTCGTGGAGCGGTACCGAGCACATCACCGCCAACCTGTACGCCGCCGAGC TGAAGGACATCTGGAACCAGTACTACGCGGACTTCGACTACACCTATGTGGTCAATGACCTGGTCAGCCTGAACCCAGGCGTGCACTTCTATCACACCCA GGACACCGGTCAGGCCCTGCTAGGCAAGATCGACAACAACACCTACAGCGTGCACTTCACCGTCAACGCAGGCTTCCACAGCGTCACCGCCGCCTACCAG CGAGTGAACGGCAACACGCCATTCGACTACATCAACCTGGGCGACAGCGTGTACCTGGACAACTCGCGCATGTACTCGGACTTCAACGCGCCGAACGAGC GTTCGTGGAAACTGCAGTACGGCTATGACTTCGCCGGTGTCGGCGTGCCTGGTTTGTCTACCTCGCTGTCCTACTCGCGCGGCGAGGCTGACCTGACCAA GGCCACTCAGGACACCACTCACTACGACTACTACCGTGAAGATGGCAAGAACGCCATGCACTGGGAACGCGACCTGGACGTGAAATACGTGTTCCAGGAA GGTGACCTCAAGGACCTGTCGGTGCTGGTGCGTTATGCCACCCACCGCGGCAGCCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAAGTGC GGGTCATCGTCGACTACCCACTGAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTTTTGCTGCCAGTGTAGGAGCGGGTTCACCCGCGAAGAAGGCTTCGCCGATGTTCGCGGGTAAATCCGCTCCTACAGGGGCACACGGCAACTCGAAAA GAACAGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATCCCTGCTTCCCTAGAATACCGCCGCCGCGAATGGCCCTGCCCACGCAGTAGCGAGC ATGCCCACCCAATCCCCGCGTTTCGCAATCTACAGGTCGCACCCCGAGCTGATCCTCAATCTGGGCAGTTGCCTTGCCGTGCTCGCCATCGTGGCCATCG TCAGCTACCTGCTTGCCCGCGAGCGCGAGAGTGTCGAGCAGTCGGCGGTGCGCTCGTCGAACAACATCGTCCAGCTGATCGAAAGCGACATTCTGCGCAA CGTCGAACTCTACGACCAATCACTGCAAGGCCTGATCTGGGCCGTCGGGCGCAAGGAACTGCCGGAAGTCCCCGGCCCGATACGCCAGCGCCTGCTGTTC
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| Amino Acid Sequence |
>porin
MPSAFRFTPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHNAGVRDTREWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHA GTSILPEHIKDDGELGAAPHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTHPYNQSGHRRIDTYY GSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQ RVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSRGEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQE GDLKDLSVLVRYATHRGSQGYASIDSNSDNDEVRVIVDYPLNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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