Pseudomonas syringae pv. syringae SM, PssSM_4818 (soxB-2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGTGGTCAGGGCGGCCCGTTGATGCACGTCATCGCCGCCAAGGCCGTGTGTTTCAAAGAAGCCATGGAGCCCGCCTTCAAGGTCTATCAACAGCAGG TCATCGACAACGCGCAAGCGATGGCGCAGGTGTTCATCGATCGGGGCTTCGACGTGGTCTCCGGCGGCACCGACAACCATCTGTTTCTGGTCAGCCTGAT CCGTCAGGGTCTGACCGGCAAGGACGCCGACGCAGCGCTCGGGCGTGCGCACATTACCGTCAACAAGAACTCGGTGCCCAACGACCCGCAGTCGCCGTTC GTGACGTCCGGCCTGCGCATCGGTACACCGGCTGTTACCACCCGCGGCTTCAAGGTGACCCAGTGCGTCGAGCTGGCAGGCTGGATCTGCGACATCCTCG ACAACCTCGGTGATGCCGATGTCGAGGCCGACGTCGCCAGCCAGGTCGCCGCCCTGTGCGCCGATTTTCCGGTTTATCGCTGAGTCAGGAGTAGCCTCAC
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| DNA Sequence for Gene |
>PssSM_4818
|soxB-2
ATGCAGCATTACTCAGGCTTCGGCCTTCTCAAGCATTCCCTCAGCCACCATGAAAACTGGCAGCGCATGTGGCGCACGCCGACCCCGAAAAAGGTCTATG ACGTGGTCATCGTCGGCGGCGGCGGGCACGGTCTGGCCACGGCCTATTATCTGGCCAAGGAGCACGGCATCACCAATGTGGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGCAACACTGCGCGCAACACCACCATCGTGCGCTCCAACTACCTGTGGGACGAGTCGGCCCACCTCTATGAACACGCGATGAAACTGTGG GAAGGCCTGTCCCAGGACCTCAACTACAACGTCATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCCTGCAGGACATGCGCGACTCCGAGCGCC GCGTCAGCGCCAACCGGCTTAACGGCGTGGACGGTGAATTGCTCAACGGCCAGCAGGTCGCCGAGGAAATCCCGTACCTGGACTGCTCGAAAAACACCCG TTACCCGATCATCGGCGCAACGGTCCAACGCCGTGGCGGCGTCGCCCGCCACGATGCGGTGGCCTGGGGCTTCGCCCGCGCGGCCGACGCGCTGGGCGTC GACCTGATTCAGCAGACCGAAGTCATCGGCTTTCGCAAGGAAAACGGCGTGTGCATCGGTGTGGAAACCAACAAGGGTTTCATCGGTGCAAAACGTGTTG GTGTGGTAACCGCCGGTAATTCCGGGCACATGGCCAAGCTGGCAGGCTTCCGTCTGCCTATCGAATCACACCCGTTGCAGGCACTGGTTTCCGAGCCGAT CAAGCCGATTATCGACAGCGTCATCATGTCCAACGCGGTACACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGTGCCGGTATCGACAGT TGGGTCGGTTATGGCCAGCGCGGCTCGTACCCGGTGATCGAACACACCGTCCAGGCCATCGTCGAGATGTTCCCGGTGCTGTCCCGCGTGCGCATGAACC GTCAATGGGGCGGTATCGTCGACACCACGCCGGACGCCTGCCCGATCATTTCCAAGACCCCGGTGCCGAACATGTTCTTCAACTGCGGCTGGGGCACAGG CGGCTTCAAGGCCACGCCGGGCTCGGGCAACGTATTTGCCGCCAGTCTGGCCAAGGGCGAGATGCATCCGCTGGCCAAGCCGTTCTCCATCGACCGTTTC CACAACGGTGCACTCATCGACGAACACGGCGCTGCAGCCGTAGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAACCCGACCATGCTGCATATCTTCTGTCCTCACTGTGGCGAACTGCGCTCCGAAGAGGAATTCCACCCGTCCGGTCAGGCGCACATCCCGCGCC CGCTGGACCCCGGTGCCTGCACCGATGAGCAATGGGGCGACTACATGTTCTTTCGCGATAACCCGCGCGGCCTGCATCACGAACTGTGGATACACGCCGC CGGTTGCCGCCAGTATTTCAACATGACGCGCAATACCGTGACCTACGAGATTCTCGAGACCTATCCGATCGGTACCAGGCCGCAGTTCACGGATCAGGGA GACAAGGTATGAGCCAGACCCATCGCCTGCCCAACGGCGGCCGTATCAATCGCAGCAAGGTGCTCAACTTTACCTTCAATGGCCAGACCTACCAGGGCTT TGAAGGTGACTCGCTGGCCTCTGCCCTGCTCGCCAACGGCGTCGATATCATCGGCCGCAGCTTCAAATACTCCCGCCCGCGCGGCATCTTCGCAGCGGGT
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQHYSGFGLLKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNGQQVAEEIPYLDCSKNTRYPIIGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDS WVGYGQRGSYPVIEHTVQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAKPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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