Pseudomonas syringae pv. syringae SM, PssSM_4722

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 304 327 -
Coils Coil Coil - - 441 461 -
CDD cd00130 PAS IPR000014 PAS domain 347 438 2.08722E-7
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 571 656 2.7143E-28
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 340 450 4.68E-23
Gene3D G3DSA:3.40.190.10 - - - 41 267 3.6E-40
Gene3D G3DSA:1.20.5.1930 - - - 439 521 1.6E-10
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 166 658 2.5E-55
SMART SM00091 pas_2 IPR000014 PAS domain 328 394 2.9E-4
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 50 269 1.0E-14
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 51 269 9.31E-31
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 530 658 1.5E-28
Gene3D G3DSA:3.30.450.20 PAS domain - - 317 438 1.9E-21
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 462 528 2.3E-12
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 59 268 9.5E-23
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 538 659 1.96E-18
Pfam PF08448 PAS fold IPR013656 PAS fold-4 335 443 5.1E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 333 448 9.9E-14
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 566 659 2.1E-6
CDD cd01007 PBP2_BvgS_HisK_like - - 48 268 9.21433E-40
Gene3D G3DSA:3.40.190.10 - - - 135 230 3.6E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.