Pseudomonas syringae pv. syringae SM, PssSM_4150 (lpxC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTCCTGACCTGTCTCTGGGTGAGTACTCGGACGTGGGTAGCATCATCGAAGCGTTCGCTTCCGAGCACGCGATGGTCAAGGTCGGTACCGTTATCGAT CCGGACATGCGTGACGAGTTGCACGTGACCGTGGTTGCCACCGGCCTGGGCGCGAAAATCGAGAAACCTGTCAAGGTCATCGACAACACGCTGCAGACCA CCCAGCAGGCTCCTGCACAGCAGGCGTCCCGCCAGGAAGCACCGTCGGTCAACTACCGTGACCTGGATCGTCCTACCGTGATGCGCAATCAGGCACACGC AGGCGCTACAGCCGCGGCGAAGATGAACCCTAACGATGATCTTGATTACCTGGACATCCCGGCTTTCCTGCGTCGTCAGGCCGATTGATGAAATGTATCA GGGGTATTAGGGTGATTGGTGTTCAGCAAAGGCATGGTCTGCTATCATCGCCAGCCTTTGTTGATACCAGTTCGCAACTTGCGCTGAAGCGGCCCATGCC
|
|
| DNA Sequence for Gene |
>PssSM_4150
|lpxC
ATGATTAAACAACGCACCCTGAAAAATATTATCCGTGCCACAGGTGTAGGCCTGCACTCCGGGGAGAAGGTTTACCTGACCCTCAAGCCCGCACCTGTGA ATACCGGCATTGTGTTTTGCCGAGCTGACCTTGATCCCGTCGTGCAGATTCCTGCGCGTGCGGAAAACGTCGGTGACACCACTCTGTCGACCACTCTGGT CAATGGTGATGTCAAAGTCGACACGGTAGAACACTTGCTCTCGGCCATGGCTGGCCTTGGCATCGATAACGCCTACGTCGAGCTCTCTGCCTCCGAAGTT CCTATCATGGACGGCAGCGCAGGCCCTTTCGTATTCCTGATTCAATCGGCAGGCCTGGAAGAACAGGACGAGCCGAAGAAATTCATCCGTATCCTGCGTG AAGTCACAGTGGAGGAGGGCGGTAAACGCGCTACCTTCGTGCCTTTCGAAGGGTTCAAGGTCAGTTTCGAGATCGATTTCGATCACCCCGTCTTCCGTGA CCGCACACAAAGTGCAAGCGTGGACTTTTCCAGCACTTCCTTCGTGAAGGAAGTCAGCCGTGCCCGGACCTTCGGGTTCATGAGTGATATCGAGTACCTG CGCAAGCACAACCTCGCACTCGGCGGCAGCGTGGAAAACGCCATCGTGGTCGACAAGGACGGTGTACTCAACGAAGACGGCCTGCGGTACGAGGACGAAT TCGTCAAACACAAAATCCTCGACGCCATCGGTGACCTCTACCTGCTGGGCAACAGCCTGATCGGTGAGTTCCGGGGTTTCAAATCGGGGCATGCACTGAA CAACCGTCTGCTGCGCACGTTGATCGAGCAGAAAGACGCTTGGGAAGTGGTGACTTTCGAGGATGCCAGTACGGCACCTATTTCTTACATGCGCCCTGTC GCGGCGGTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGCTTTACTCTCTTTCCTTTTGTTCTTTAAAGGCTGCCCTCGGGTGGCCTTTTTTTATGGTTTTTTTCAGGGAGGGTCAGTGCTCGCGGAGGTCGTG CAGCGATCAGACAGGGTTATTTCCTGTCCTTCGCATGGCTGGCCAGCCGTTCCAGTGCGGCGCGCAAGCGCGGATCGGTGATGCCTTCAGCGGTGGCCTG AATGTTTTCGGCAGCCACTGCCGACAGGTCGATCGTGTGCGTGGCGGCTCCGCGTGGCGCTTCAGGCGGCTGCACCTTGAACACGATGCGGGTCAGGTTG ATGAATTCGTCAAAAGCCATCATTTGCCGGTGCAGGCGTTTCTGCTGGTAGCGCAGGCGCGTGGCCCAATGACCATCCGTCACGATCAGCAACAAGGTAC CTTCGCGCCACGATGCCACGCGACAATGCTCGCGGGCCGCAGGTTGCAGCTGGCTTTCGAGCAGGCGCTGCAAGTGGCTGAGTCGCTCGGCGTGGCGAAA
|
|
| Amino Acid Sequence |
>UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVNTGIVFCRADLDPVVQIPARAENVGDTTLSTTLVNGDVKVDTVEHLLSAMAGLGIDNAYVELSASEV PIMDGSAGPFVFLIQSAGLEEQDEPKKFIRILREVTVEEGGKRATFVPFEGFKVSFEIDFDHPVFRDRTQSASVDFSSTSFVKEVSRARTFGFMSDIEYL RKHNLALGGSVENAIVVDKDGVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNRLLRTLIEQKDAWEVVTFEDASTAPISYMRPV AAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|