Pseudomonas syringae pv. syringae SM, PssSM_4113 (bifA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TACTACATCGATTACCGCAATCTGCGTCCGAAGTACGTAGAAGCGTTCTGGAACCTGGTGAACTGGGACTTCGTGGCCAAGCAATTCGCAGCCTGAGTCC AGCGTCATCAAAAAAACCCGGCCTTGCGCCGGGTTTTTTATGTTTTGCAGCCTGTACAGGCCGCTCACCAGACGCCTGTTTTACCGACGGCGTCGAACAC CGGCCTGCCCGTCAGGCGAATCGCAAATCTTTTTTCGCCTGCCGCTCGTACTTTGTGTATTGTCAGAAAACGCTAGCTGACTCGTACCCCAACGTAATTC TCTATGACGTAATTCTTTACAGTGTTCTGCTCTAGTTACCTACATGGCCACCCGACGCATTGAGGTGGCTTTGGCCAGCAGGTGCAAGGAACGCGAAGAT CAGCAAGGCGCACCGGTTGTGACAAGGTCACAGCGTGCGGGTCTGGTTTTTCGAGGGTCATGAGGCAATATGCCCTGCGACACGAACTAAGGAACGGCCA
DNA Sequence for Gene
>PssSM_4113 |bifA
TTGAAGCTGGAACTCAAGAACAGCCTGTCGGTAAAGTTGCTGCGCGTTGTGCTGCTTTCGGCGCTTCTGGTAGGCATCCTGCTCAGCTGTGCGCAAATCG TCTTCGACGCCTACAAGACACGTCAGGCCGTGGCGAGCGATGCCGAGCGAATTCTCGGCATGTTTCGCGATCCTTCGACGCAGGCCGTCTACAGCCTGGA CCGCGAGATGGGCATGCAGGTCATCGAGGGCCTGTTCCAGGATGACTCGGTACGCATGGCGTCCATAGGGCACCCCAACGAAAGCCTGCTCGCCGAGAAA AACCGGCCACTGAAAACCTCCTCTACCCGCTGGCTGACAGACATCATCCTCGGCCAGGAGCGCAGCTTCACCACTCAACTGGTAGGCCGCAACCCCTACA GCGAGTATTACGGCGACCTGCGCATCACGCTGGACACCGCCAATTACGGCGAAAGCTTTCTGGTCAATGCCGGAATCATCTTTATCGCGGGCGTGCTGCG TGCGCTGGCAATGGGGCTGGTGTTGTATCTGGTCTATCACTGGCTGCTGACCAGACCGCTGTCAAAGATCATCGAACACCTGATCGCGATCAATCCCGAC CGCCCCAGCGAACACCAGTTGCCGCTGCTCAAAGGCCACGAGAAAAACGAACTGGGAATCTGGGTCAACACCGCTAACCAGTTGCTGGCTTCCATTGAGC GCCACACTTACCTGCGCCATGAGGCCGAGAACAACCTGCAGCGCATGGCGCAGTACGACTTTCTCACCGGCCTGCCCAATCGACTTCAATTGCAGACCGG ACTGGACAGGATTCTGGAAGACGCGGGACGCCAGCAACACAGAGTGGCGGTTCTTTGTGTAGGTCTGGATGACTTCAAGGGCATCAACGAACAGTTCAGC TATCAGTCCGGTGACCAATTGCTGCTCGCCCTCGCTGATCGCTTGCGCGCGCACAGCGTAAGACTCGGTGCCCTTGCGCGCTTGGGCGGCGACCAGTTCG CGCTGGTCCAGTCCAACATCGAGCAGCCTTACGAGGCGGCTGAGCTGGCGCAAAATATCCTGGATGAGCTGGAAGCACCGTTCATCGTCGGTGATCAGCA GATTCGACTGCGGGCAACCATCGGCATCACGCTGTTCCCGGAAGACGGTGACAGCACCGAGAAGCTGCTGCAAAAAGCCGAGCAGACCATGACGCTGGCC AAAGCCCGCTCACGTAACCGGTATCAGTTCTACATCGCCAGCGTGGACAGCGAAATGCGTCGCCGCCGCGAACTCGAAAAAGACCTGCGCGAAGCCCTGC CACTCAATCAGTTGTACTTGGTCTATCAACCACAGATCAGCTACCGCGATCACCGTATCGTCGGTGTGGAAGCACTGATCCGCTGGCAGCATCCGGAGCA TGGCCTGGTGCCGCCGGACGTTTTCATCCCGCTGGCCGAACAGAACGGCACCATCATCGCCATAGGGGAATGGGTGCTGGATCAGGCCTGCCGCCAACTG CGCGAATGGCTCGATCAAGGCTTCACCGATTTGCGCATGGCCGTCAATCTGTCGACCGTGCAACTGCATCACGCCGAACTCCCCCGCGTGGTCAACAACC TGCTGCAGATCTACCGCTTGCCACCGCGCAGCCTGGAACTGGAAGTGACCGAAACCGGGCTGATGGAAGATATCAACACCGCCGCCCAGCACTTGCTGAG CTTGCGCCGTTCCGGTGCCTTGATTGCCATCGATGACTTTGGCACCGGCTATTCATCCCTGAGCTACCTGAAAAGCCTGCCGCTGGACAAGATCAAGATT GACCGCAGCTTCGTGCAGGACCTGATCGATGACGACGATGACGCCACCATCGTGCGAGCCATTATCCAGTTGGGCAAAAGCCTGGGCATGCAAGTCATTG CCGAAGGCGTGGAGACCGTTGAGCAGGAGGCCTATGTGATGACCGAGGGCTGTCACGAAGGCCAGGGCTATCTGTACAGCAAGCCGCTGCCGGGTCGGGA GTTGCTGGCTTACCTCAAGCAGTCGCGTCAGGACCACGCCGCCAGCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGGCTTGCACGCTTCCGGCCATTCAGGTCATCTTGAAACCGACTGTTACAACCTGCCGGATGCCTGAACACGCCCACACAGGCGTTTTGCCTTTACAT CGAATGCAAATCTTTCGCATTATGTCGCAGATTTTATGGGCGCACCCCCGCCATCACCTTTATCGACGCAGGATTCCGTCATGATTCGTATGCCTCTGGC AACCGCTAGTCTGTTGGCCATCGCTATCTCTCTCGCCGGTTGTGGCGAAGGCAAGGACAAGGCTGCCGCCCCGGCACCCGCGCCAGCCGCTGCTCCGGCG ACGCCGGCTGTGACGCCTGCGGCCCCTGCTCCGGCAGCCGCTGCCCAGACTGACGATGCGGCGGCCAAGGCTGTGGTCGCGAACTACGCCAACATGGTGT CCGCCGTGTTCGACGATGCCGAGGCCGGCGCGAAAAAACTCAGCACTGCCGTCGACGCATTTCTGGCCAAACCCAACGATGAAACCCTGAAAGCCGCCCG
Amino Acid Sequence
>Putative biofilm formation regulator HmsP
MKLELKNSLSVKLLRVVLLSALLVGILLSCAQIVFDAYKTRQAVASDAERILGMFRDPSTQAVYSLDREMGMQVIEGLFQDDSVRMASIGHPNESLLAEK NRPLKTSSTRWLTDIILGQERSFTTQLVGRNPYSEYYGDLRITLDTANYGESFLVNAGIIFIAGVLRALAMGLVLYLVYHWLLTRPLSKIIEHLIAINPD RPSEHQLPLLKGHEKNELGIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQHRVAVLCVGLDDFKGINEQFS YQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIPLAEQNGTIIAIGEWVLDQACRQL REWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVMTEGCHEGQGYLYSKPLPGRELLAYLKQSRQDHAASL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site