Pseudomonas syringae pv. syringae SM, PssSM_3483 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCGGGGCGCCGATGTTGCTGGCCAAGGGTACTGACCTGGTGGCACTGAAAATTCGCGAAATCGGCGCGCATAACGAGATCCTGATTCTGGAGTCTGCG GCACTGGCGCGTTCTATCTACTACAGCACCGAGCTTGACCAGGAAATCCCCGCCGGCCTGTATCTGGCGGTCGCACAGGTGCTGGCCTACGTCTACCAGA TCCGCCAGTTCCGCGCCGGTCAGGGCAAGCGCCCCGACCCTCTGGGCGACATCAGGATTCCTCCCGACCTGCAGCGCGACGCGTAGCCCGCTCTCCCTTC GTTGCCGGCAGACCACCATCTTGGCCATGCTCCGCGTGGGCATGCCGTTCCGGGCGGTCCGCCCTCCGGTTTAACCTGGCTTGTGTCTCTAAAACCTTAC CGCCGCTGGCTTTGTAAAAGTTGGACAGCTTTTTGCAACAGGGTCGATACAGGGCGCCATCGGCGTCAATGTTTTGATCTAGTGCGCAGGTAACGAATCA
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| DNA Sequence for Gene |
>PssSM_3483
|flhA
GTGGATCGCTCTCAATTACTCAGTAGCGCACGCAGCAACATCACAGGCCTGGGCCGTGGTCAGTTGGGCGTTCCGTTGTTGTTGCTGATCATGCTGGCAA TGATGATGTTGCCCATGCCGCCGTTCCTGCTGGACGTACTTTTCACGTTCAACATTGCACTGTCCATCGTCGTGCTGCTGGTCTGCGTATACGCCCTGCG GCCGCTGGATTTTTCTGTGTTTCCGACCATTCTGCTGGTCGCCACGTTGCTGCGTCTGGCGCTGAACGTGGCTTCCACCCGGGTGGTGATGCTTCACGGC CAGGACGGCCACGCCGCGGCGGGCAAGGTGATTCAGGCCTTCGGTGAAGTGGTGATCGGTGGCAACTACGTCGTCGGTATCGTGGTGTTCGCGATTCTGA TGATCATCAACTTCGTGGTTATCACCAAGGGTGCCGGCCGTATTTCCGAGGTGAGCGCGCGCTTCACCCTCGACGCGATGCCCGGCAAACAGATGGCGAT CGACGCCGATCTCAACGCCGGTCTTATCGACCAGCCGGAAGCCAAGCGCCGTCGTGCCGAAGTGGCCCAGGAAGCCGAGTTCTACGGGTCCATGGACGGT GCCAGCAAGTTTGTACGCGGTGACGCGATTGCCGGCCTGCTGATTCTGTTCATCAACCTGATCGGCGGCATGCTGGTCGGTATCTTTCAGCACAACATGA CCTTCGCCGATGCGGGTCGCGTTTATACCCTGTTGACCATCGGTGACGGTTTGGTGGCGCAATTGCCATCACTGCTGCTGTCCACCGCCGCCGCGATCAT GGTGACCCGTGCTTCCGGTTCTGAAGAGATGGGCAAGCTGATCAATCGCCAGATGTTTGCCTCGCCCAAGGCGCTGGCTGTATCTGCCGCCATCATGATC GTGATGGGTCTGGTGCCAGGCATGCCGCATTTCTCCTTCATCGGCCTTGGCTTGGTGGCCGCAGGTGGTGCTTACCTGCTGTGGAAGAAAGACAACCAGG TGAAGGTCGAGGCGCTGGCCGAAGTGCAGCGTCAACAGGACCTGCTGCCGTCACCGACCCGCGTTCAAGACTCCAAGGAGCTGGGCTGGGATGACGTCAC CCCCATCGATATCATCGGCCTGGAAGTAGGTTACCGCCTGATTCCGCTGGTGGATCGCAATCAGGGTGGTCAGTTGCTGGCGCGTATCAAGGGTGTGCGC AAGAAGCTCTCGCAAGAGCTCGGTTTTTTGATGCCCACCGTGCACATTCGCGACAACCTTGATCTGGCGCCAAGCGCCTATCGTCTGACACTGATGGGCG TGATTCTGGCCGAGGCCGAGATCTACCCGGATCGCGAGCTGGCGATCAACCCCGGTCAAGTGTTCGGCACCCTTAACGGCATCACCGCCAGAGATCCGGC GTTTGGTCTGGAAGCCGTGTGGATCGAAATAAGCCAGCGCAGTCAGGCTCAGTCGCTGGGGTACACGGTGGTCGATGCCAGTACTGTAGTGGCGACTCAC TTGAACCAGATTCTCTACAAGCATTCGCATGAGCTGATCGGCCACGAGGAAGTCCAGCAATTGATGCAATTGCTGGCCAAAAGCTCGCCCAAGCTGGCTG AAGAGCTGGTACCTGGCGTGCTGTCGCTGTCCTCGCTGCTCAACGTGCTGCAAGCGCTGCTGGCTGAACACGTACCTGTCCGGGATATTCGCAGCATTGC AGAGGCTATCGCCAACAACGCCGGGAAGAGTCAAGATACCGCCGCTTTGGTGGCCGCGGTGCGCGTGGGTCTGAGCCGCGCAATCGTCCAAAGCATTGTA GGCGTTGAGCCGGAGCTGCCTGTTATCACTCTGGAACCAAGGTTGGAACAGATATTGCTCAATAGTTTGCAGAAGGCTGGTCAGGGTCAGGAAGAAGGCG TTCTTCTTGAGCCAAGCATGGCTGAGAAGCTCCAGCGTTCGTTGATCGAGGCCGCCCAGCGTCAGGAGATGCAAGGGTTGCCGGTAATTCTTCTGGTAGC AGGGCCTGTCCGGGCGATGCTGTCACGATTTGGACGATTGGCTGTACCGAACATGCATGTTCTGGCGTACCAGGAAATTCCGGACAACAAGCAAGTAACC ATCGTAGCGACTGTCGGGCCAAACGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGAGTCATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAAGCCATGAAGCTGGTTCGCGATGAGCTGGGCGCTGAAGCGGCCATCATCGG TAACCGGCGCATTGCCGGTGGCGTAGAGCTGACTGCTGCTCTGGATTACAAGCTGTCCGCCCTGGCACCGCGTGTGCCGAACATGGAACTGGAAGACGAG CTGCGCAAGACTCAGTCGCGCATCGTTTCCGCCCAGGCCGAATTGAACAACCGCAGCGACAGCGACGCATCGATCAACCTGCAGCTGTTTTCCGGCAAGC CGGCCAACCCTGCCGATACGCACATTGAGCCGACGCTCGAAGAGCCGCCGCGTCCATTCGCGTACGCACCGGCACAGGCCGCCGAGCCTGCCATTGGCCA GCGCGCCTATGACTCGATGCGCTCCGAATTGAACGGCCTGCGTGAGTTGCTGGAAGTCCAGCTCGGCTCGCTGGCCTGGAACCAGCTGCAGGGCAGTCGT
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRSQLLSSARSNITGLGRGQLGVPLLLLIMLAMMMLPMPPFLLDVLFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHG QDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLVGIFQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAIMI VMGLVPGMPHFSFIGLGLVAAGGAYLLWKKDNQVKVEALAEVQRQQDLLPSPTRVQDSKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATH LNQILYKHSHELIGHEEVQQLMQLLAKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIV GVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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