Pseudomonas syringae pv. syringae SM, PssSM_3376
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACCGTCTTCAATGACGACATGCCACACAATCGCCCAGACCTGTCAATCGACAAGAAACTGGCTGTCGACGACCATTTGTTCTTCGTTGCACTCGCGGA TGACCAAGTGGTCGGGACCCTCCTTGCTGGCTACGACGGGCATCGCGGCTGGCTGTATTCGGTTGCCGTTGATCCGCAACAGCGCGGCAACGGCCTGGGT ACCCGGCTGGTCAGGCATGCAGAAAAAGCGCTTGCGGGTCTTGGCTGCGTGAAGATCAACCTGCAGATCCATACCTTCAATGAAAGCGTGCAGGCCTTCT ATCAAACCCTGGGCTACACGCCGGAGCTCATTATCAGCATGGGCAAGCGGATCGATGCCAACGTAACGGCTCAGTCCTGAGCCGAGCGCTCTCTGTTTGC CGAGGCGACCGAAACCATCGGGCGCCTCAATCATTTATTTACATGAGAATTAATATCAAATTACAATTATTGCTATTAACGTCCTAGCAGAGCATCTCCC
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| DNA Sequence for Gene |
>PssSM_3376
TTGAGCACGTCCTTCCAATGCCCTCGCCGTCCCGGCACTTTTCTGCTGTCCGCGCTTTCTCTGGCGATGTTCTACGGCGGCGCGGTGCATGCAGCCGAAA CCGCAATGCTGCCCGCCACGCAGGTGTCGGCAACTGCGACCGAAGCGCAGGAAGGCTACAGCGCCAAAAGCGCCAGCACCGCGAGCAAGAGTGATGTACC ACTCAAGGAAGAAGCGCAGTCGGTCAACGTGGTGACACCGCAGACCATCGCCGACTACAACGTGCGCTCGCTGGACGATGCCATGAAGTTTGTCAGTGGC GTCAGCCAGGGCAATACGCTTGGCAACACCAAGGACTCACTGGTCAAGCGCGGCTTCGGTACCAATGATGATGGCTCGGTACTGCGTGACGGCGTGCGCT CGGTGGTGTCGAAAAATTTCGGTGCCACGACCGAACGCGTTGAAGTGCTCAAAGGCCCGGCCTCGCTGCTGTACGGAGCAATGGAGCCAGGTGGCGTGAT CAACGTGATCAGCAAACAGCCGCAATACGTGCAAAGCACCACGCTCAGTGGCTCGGCGTACAGTGAAGGCGGCGGCAGTTTCGGCGTCGACACCACCGGC CCGCTCGGCGACTCGGGGCTGGCCTACCGCCTTGTGGCCGAGCGTCAGAGCGAGGACTACTGGCGTAACTATGGCGTTGACCAGCACACGCTGGTCGCGC CGTCGCTGTCCTGGACCGGGGAGCGCGCCAGCCTGACGCTGGCTTACGAATACAACGACTACGTCAGCCCGTTCGACCGTGGCACGGTGTTCACGGGCGG TCACCCGGCCGATATCAGCTACGACAAGCGCCTGGACGAAAAATGGGCAAATACCGTCGGCATCAGCGAAACCGCGACCGCGCGCTTCGAGTACCAGCTC AGCGATGACTGGAAAACCCGCCTGACCTACGGCTGGAACAACGACCGCTACAGCCTCTCGATTGCCCAGCCGAGTACGCTGTCCAGCAGCGGCGTGCTGC GGCGTCAGGCCAATGGCGGCCATTACGATTATGAAACGCGTTATGCCAGCTGGGACTTCATCGGCAAGCAGGAGGTGTTTGGCCAGCAACATGATCTGCT GATCGGTGCCGAGCAGGAAGACTCCGACAAATACCGCGGCAAGACCTACCGCAACGCCATTCAGGGTGGCTTCAATATCTTTTCGCCCAGCTACGGTAGC CTGGCGGAGCCCAGTGTTGTCAGCACGACCACCAGCAACCTGAGCAACCAACTGACCTCATCGTCCGTTTACCTCAAGGATAACTGGCACCTCGATGACC GCTGGATTCTGGTCCTGGGTGGCCGTTACCAGCATTATGACCAGTACATCGCCCAAGGCCTCGGCGCCACCCGCAACACTAACCTGAACAAAAATGACGA TATATTCCTGCCGATGGCGGGCCTGGTGTTCAAGGTCAATGAAGACCTGTCGCTGTACGGCAATTACAGCCGCTCTTTCGTCCCCAACGAGGCCGTTAAC GATGACGGCACCACTTTCGATCCGGAAGAAGGCCGCAGCTACGAAGTCGGCGCCAAATATGCACTGGCACCGGAACTCGACTTCAACCTCGCCGTGTTCG ACATCGAGAAGAAAAACGTTGTGACCACCGTTGCTACCGGCGTCAGTGAAGCGGCTGGCAAAGTTGGCTCACAGGGCGTGGAGCTGGACGTGACCGGCCG CATCGCCGAGCGCTGGGACATGATCGGTACTTACGCCTACACCCACACCGAAGTGCTCGACGATCCGAAGAACGAGGGCAATCGTCTGATTCAGGCACCC AAGCACACAGCCAGCCTGTACCTCACCCACCACCTGCAAGTCCCGTCCGGTCTGGGCGACTGGCACGCCGGTGGCGGCGCACGCTACGTCGGCGAACGCG CCGGCGACGATGCCAACACCTTCTATATGAGCAGCTATACCGTGGCCGATGCGTTTCTGCGCTGGGACGTGCCTATGGCCGGTTATAAAACACGCCTGCA GTTGAACGTGGATAACCTGTTCGACAAGCAGTACTACCCGTCCAGCACCGGCAGCCAGTTGCAAGTCAATGTGGGTGAACCGCGCACCGCACGCCTGAGC GCCAGCGTCACGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGTTGCCACAGAGCAGGCCTGCGCGGGCTTGCTCGGTGGCACTTGAAGGGATGTATCAGAACTTAATTCGGTAAAAGCTGATCAGCGCTTCATTGCCA TACAGGTATTCGAACCTGCCGATGAACGCGCTCTTCTCCAGCCACTCGTTAGGACCCAGAGAAACCTGAAAGCGGGGTGTGCAAGTGCACTGGTAATGGC CTTCGCTGATTGGCCATACTCCGTTCTGCAGCTCGTGCTGGCCCATTTCGTCAACAAGCAGAGCGCCTCTGCTTTCTACGTTGATCATTTCACCCAGTTG GGTGACCAGCGTGAAACGGGTTTCGAGAAAGGCCAGCTCGGATGACAACTCAACCAGCGTATTGCTACCGCCGGAGAGTACCGAGCCGCTGAAGTTTTCG CCGTAAAACTCCCCGCCCAAAACAGTGCTGTTGCTACGCAGTCCATCGCTGCATATCCCCATGAGCACAGGAGCATCGGTCTTCAGAATCACCGTCAGCA
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| Amino Acid Sequence |
>TonB-dependent siderophore receptor
MSTSFQCPRRPGTFLLSALSLAMFYGGAVHAAETAMLPATQVSATATEAQEGYSAKSASTASKSDVPLKEEAQSVNVVTPQTIADYNVRSLDDAMKFVSG VSQGNTLGNTKDSLVKRGFGTNDDGSVLRDGVRSVVSKNFGATTERVEVLKGPASLLYGAMEPGGVINVISKQPQYVQSTTLSGSAYSEGGGSFGVDTTG PLGDSGLAYRLVAERQSEDYWRNYGVDQHTLVAPSLSWTGERASLTLAYEYNDYVSPFDRGTVFTGGHPADISYDKRLDEKWANTVGISETATARFEYQL SDDWKTRLTYGWNNDRYSLSIAQPSTLSSSGVLRRQANGGHYDYETRYASWDFIGKQEVFGQQHDLLIGAEQEDSDKYRGKTYRNAIQGGFNIFSPSYGS LAEPSVVSTTTSNLSNQLTSSSVYLKDNWHLDDRWILVLGGRYQHYDQYIAQGLGATRNTNLNKNDDIFLPMAGLVFKVNEDLSLYGNYSRSFVPNEAVN DDGTTFDPEEGRSYEVGAKYALAPELDFNLAVFDIEKKNVVTTVATGVSEAAGKVGSQGVELDVTGRIAERWDMIGTYAYTHTEVLDDPKNEGNRLIQAP KHTASLYLTHHLQVPSGLGDWHAGGGARYVGERAGDDANTFYMSSYTVADAFLRWDVPMAGYKTRLQLNVDNLFDKQYYPSSTGSQLQVNVGEPRTARLS ASVTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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