Pseudomonas syringae pv. syringae SM, PssSM_3295
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATCCATGAGCGTATCGAGCAGAGCCGCATTGCGATCGAGAGCCTGGACACGCCTGCCGATCCGGCTGACGCTGCTTCGGTCGAAGAAGAGCGTCACTG GCTGGTCAACGTGATCGATCGCGACCAGCGCATGCTGCCACAGTTGGAAATGGCCCTTTCGCGTATTGCCGATGACACCTTCGGCTGGTGCGACGACAGC GGCGAGCCAATCGGCCTCAAGCGCCTGCTGATCAGCCCCACTACCAAGTATTGCATCGAAGCGCAAGAGCGCCACGAGCAGATCGACAAGCACCAGCGCC AGGCCTGATAGACAGGTAACAGCGACTGAGTGTCCAGACCGGGAGGCAAGCAATTGCCTCCCGGTTTTGTTGTGCCCGGAATTTGTCGAAAACACGTTGA CGTCCATCGCCCGGTCGCTACGACCAACAGCGCATGGCACAAGGCCGTTATCTGGCGTTTAATAGCGCCATAACGACAATGACAGACGGGGTGACGCAAC
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| DNA Sequence for Gene |
>PssSM_3295
ATGGCCGACAACCTATCCATGGCAGCCGGATTACCGCTGGCCGATACGCCCGACGCTGCATCGAGGTGGTGGGTGCCGGCGGTGCAAAGCGTGGTCCTGT GCCTGCTGCTCGCCGCCATGAGCCTTGCAGGCCTGTCGCTGTATGTCGTCGTTCCGCTGGCGTTGCTGGTGGTCTGGTTGCCGCGCCTGGTGCCCAGCAG GCAAGCGCTTCCAGGCAGCGCGGTGGGCGACAGCGATATCGCCTTGCTGACCCGCGATCTGTCGCGCACCACCAGTCATAACGCGCTGTCCGCGGCCCAA GTGGCCTTTTCGGTCGGGCAACTGGCTGGCAAGGTGCAGTCGCAACTGGGGGCTGCCGAACAGATCGTCAGCAGTGCCGAACAGATGATCGCCACCGAGC AACAGACAGCCCAGTTGAGTCAGCAGGCATTGGTTGCCGCCAGCGAGGCGCGCCAGCGCAGCGAATCGGGCAGCAGCGTGCTGAATGAGTCCATCGAACG CATGCACCGCCTGAGCAAGCGTGCCGTCGGCAGCCGTGAGCTGATTGAGGCACTCAGCCAGCGCAGTGAAGAGATCCAGCGTGTAACGCTGGTCATTCAG TCGATTGCCAGCCAGACCAACCTGCTGGCGCTAAACGCCGCCATCGAAGCGGCGCGGGCTGGCGAGCACGGACGCGGTTTTGCCGTGGTTGCCGACGAAG TCCGCGGGCTCGCTGGCCGAACTGCCAGTGCCACCGGGGAAGTCGGGCAGATGGTGGCGGATATCCAGCAGCGCACCGCACAAGTCGTGGAGCAGATTCG TGAGCTGTCGTCCGATCTGGATGTGGGTGTCGAGCAGGTCGAGCTGACCGGCGAGCACCTGGGCAATATCGCCCGGCTTGCGGTCGAACTGGAAAGCCAG GTCGGCGAAATCGCGCAGGGCGCTAGGAGCAATCAGGATCAGTTGGCGAGCCTGTTCGACGCTGTCGAGCACATGCGCAGTGATCTTTCTGTCAGCGATG AGCAGACCCGGCAACTGGCCAAGTCCGCAGTGCAGATGGAGGGGCAGGCCGAGACTATCAGTCAGCGCCTGGCGCAGGTCGGTCTGGATGAATACCACCA ACGCATTTACGACTTGGCTCGTGAAGGCGCGCGAATGATCAGCGAAAAATTCGAGGCCGATATCGAACAGGGGCGCGTCAGCCTTGATGACCTGTTCGAC CGCAATTACAAACCCGTCGCCAATACTTCACCCACTCGCTTTACAACACGTTTCGACCGTTATACCGATCAGGTATTGCCAGCACTGCAAGAGCCGCTGC TGTCGCGCCACGAAGGTCTGGTATTTGCCATCGCCTGTACCCAGCAAGGCTATGTGCCGACGCACAACAATGCCTTCAGCCAGCCCTTGACCGGCGATGC CACGCTGGATAACGCGCGCAATCGAAGCAAGCGCAAGTTCGATGACCGTACCGGCATTCGCTGTGGCAGCCACCAACAGCCGGTCCTGCTGCAAACCTAC ACGCGAGACACCGGTGAACTGATGCACGACCTGTCCGTGCCGATCCTGGTCAACGGCCGACATTGGGGCGGCCTGCGCTTGGGGTACAGGCCGCAAGGCC GCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGCGTAACCGATCATTCAGGCTGGCAAAAGGGCTGGCTTGTTAGTTGGTTTTTTCAAAGAAATAACTAATCAGCAAAGTTGCTGGCGCGTGTGTAGGT TTTTAGTTGAAGGTAATAAAGTCATGGCGATAGAAGTTGTAGGAGCTGTCTGAAAACGTGCAACATGGCTTGACTGCTCACTGTCTTTAAGCAAGCTGTT TAAATCAACGTTATTTACGTTTTGATTTAAGCGCAGCCTTTTCATGGCTTGCCTCTAGGGACGGAAGTGTTATGAGCGATAAACGGAGTTCTCAACAGTC AGCAGCCCTTTCAGATGTGGTGACACGGCGCGTCACGGTACGGGTAGGGATTTTCTTCGATGGGACGGGAAATAATCGCGTCAATAGTCAGATCGGAGCC GACTGCCAGGCATTGGTGGAGATCAATGAGGGGCAGCATATTAAAGCGTGCGCGGGTCGTCATGTTCAGCCTGGCAGTAGTTACAGTAATGATCCAAGCA
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| Amino Acid Sequence |
>Methyl-accepting chemotaxis protein
MADNLSMAAGLPLADTPDAASRWWVPAVQSVVLCLLLAAMSLAGLSLYVVVPLALLVVWLPRLVPSRQALPGSAVGDSDIALLTRDLSRTTSHNALSAAQ VAFSVGQLAGKVQSQLGAAEQIVSSAEQMIATEQQTAQLSQQALVAASEARQRSESGSSVLNESIERMHRLSKRAVGSRELIEALSQRSEEIQRVTLVIQ SIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTASATGEVGQMVADIQQRTAQVVEQIRELSSDLDVGVEQVELTGEHLGNIARLAVELESQ VGEIAQGARSNQDQLASLFDAVEHMRSDLSVSDEQTRQLAKSAVQMEGQAETISQRLAQVGLDEYHQRIYDLAREGARMISEKFEADIEQGRVSLDDLFD RNYKPVANTSPTRFTTRFDRYTDQVLPALQEPLLSRHEGLVFAIACTQQGYVPTHNNAFSQPLTGDATLDNARNRSKRKFDDRTGIRCGSHQQPVLLQTY TRDTGELMHDLSVPILVNGRHWGGLRLGYRPQGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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