Pseudomonas syringae pv. syringae SM, PssSM_3270 (atoA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGCGACATTGACGCGCGGGTAGCGCCCACGAAACACCTTCAAGGCCGCTGGCAGCAGATTGCCGGCAAACGACGGCATGGCGGCGACCGACACCCTGC CCATTTGCAACGTAAAACGCTGGCGCAGCAGTTCTTCGGTGTTGTCCCAGTCGGCCAGCAACTGGCGCGCCAGCGGCAACAAGGTTTCGCCCTCGGGCGT CAGACCGACGTTGCGCGTGGTGCGCGTCAACAGCTGTCCGCCAAGGTCCTCTTCGAGGCTCTTGATCGTCAGGCTCAAGGCCGGTTGCGACACGTTAAGA CGCTCGCCGGCCTGAGCGAAACTCAGGTACTGCGCAACGGCCAGAAAAGCGCGAAGCTGCTTGACGTTCATATATTTGCTTTTCTTATGAATTGATCAGA AAAACAAAATTAACAAATCAGTCCCGTCGAGAGAAGATGCAGGTCACCCGATCCTCCGACAGCGCGACTGTCGGTCAACAACTATAAAAGGCGGATCATC
|
|
| DNA Sequence for Gene |
>PssSM_3270
|atoA
ATGGCTGGACTCGATAAACGAGTAGCGACCTACGAAGAAGCCCTCGCCGGGCTGGCCGACGACATGACGGTACTCTGCGGCGGCTTCGGCCTGTGCGGCA TCCCGGAAAACCTGATCGCGCAGATCAAGCGCATGGGTATCAAGGGCCTGACCGTGGTCTCCAACAACTGCGGCGTTGACGGCTTCGGACTCGGCATCCT GCTTGAAGACCGGCAGATCCGCAAAATGATTTCGTCCTACGTCGGCGAGAATGCCTTGTTCGAAAAGCAGCTGCTCAGCGGCGAGCTGGAAGTCGAACTC ACGCCACAAGGCACCCTGGCGGAAAAACTGCGTGCCGGTGGCGCAGGCATTCCGGCGTTCTATACCGCAACCGGTTACGGAACGCCGGTCGCCGAAGGCA AGGAAACCCGTCAGTTCAACGGCCGCAACGTGATTCTGGAAGAGGCCATCACCGGTGACTTCGCCCTGATGAAGGGCTGGAAAGCCGACCACTTCGGCAA CGTCATCTATCGTCATACCGCACAGAACTTCAACCCGGTGGTGGCCACCGCCGGACGGATCACCGTGGTAGAGGTCGAGGAAATCGTCGAGCCGGGCATG CTGCTGCCTACCCAGATCCACACCCCAGGCATCTACGTCGACCGGGTCATCCAGGGCACTTTCGAAAAACGCATCGAACAGCGCACCGTCAGAAAATCCT GA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAGCGCAGCCTTGGCCCTACAACAATAAAGAGGCTTCAGACGATGGCACTTTCCCGCGAACAAATGGCTCAACGTGTCGCCCGTGAGCTCAAGGACGGTT ATTACGTGAACCTTGGCATCGGTATTCCGACCCTGGTGGCCAACTACGTGCCCGATGACATCGACGTCATGCTCCAGTCGGAAAACGGCCTGCTGGGCAT GGGCGCTTTCCCCACCGAAGACACCATCGACGCAGACATGATCAATGCCGGCAAGCAGACGGTCACCGCGCGCATCGGCGCCTCTATTTTTTCGTCGGCC GAATCCTTTGCCATGATCCGCGGCGGCCATGTCGACCTGACGGTGCTCGGCGCTTTCGAGGTGGATATCGAGGGCAACATCGCTTCGTGGATGATCCCCG GCAAGCTGATCAAGGGCATGGGTGGCGCGATGGACCTGGTGGCGGGCGCTGACAACATCATCGTCACCATGACCCATGCGTCGAAGGACGGCGAATCCAA
|
|
| Amino Acid Sequence |
>Acyl CoA:acetate/3-ketoacid CoA transferase, subunit A
MAGLDKRVATYEEALAGLADDMTVLCGGFGLCGIPENLIAQIKRMGIKGLTVVSNNCGVDGFGLGILLEDRQIRKMISSYVGENALFEKQLLSGELEVEL TPQGTLAEKLRAGGAGIPAFYTATGYGTPVAEGKETRQFNGRNVILEEAITGDFALMKGWKADHFGNVIYRHTAQNFNPVVATAGRITVVEVEEIVEPGM LLPTQIHTPGIYVDRVIQGTFEKRIEQRTVRKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|