Pseudomonas syringae pv. syringae SM, PssSM_3269
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGCGGTATAGAACGCCGGAATGCCTGCGCCACCGGCACGCAGTTTTTCCGCCAGGGTGCCTTGTGGCGTGAGTTCGACTTCCAGCTCGCCGCTGAGCA GCTGCTTTTCGAACAAGGCATTCTCGCCGACGTAGGACGAAATCATTTTGCGGATCTGCCGGTCTTCAAGCAGGATGCCGAGTCCGAAGCCGTCAACGCC GCAGTTGTTGGAGACCACGGTCAGGCCCTTGATACCCATGCGCTTGATCTGCGCGATCAGGTTTTCCGGGATGCCGCACAGGCCGAAGCCGCCGCAGAGT ACCGTCATGTCGTCGGCCAGCCCGGCGAGGGCTTCTTCGTAGGTCGCTACTCGTTTATCGAGTCCAGCCATGATGATCCGCCTTTTATAGTTGTTGACCG ACAGTCGCGCTGTCGGAGGATCGGGTGACCTGCATCTTCTCTCGACGGGACTGATTTGTTAATTTTGTTTTTCTGATCAATTCATAAGAAAAGCAAATAT
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| DNA Sequence for Gene |
>PssSM_3269
ATGAACGTCAAGCAGCTTCGCGCTTTTCTGGCCGTTGCGCAGTACCTGAGTTTCGCTCAGGCCGGCGAGCGTCTTAACGTGTCGCAACCGGCCTTGAGCC TGACGATCAAGAGCCTCGAAGAGGACCTTGGCGGACAGCTGTTGACGCGCACCACGCGCAACGTCGGTCTGACGCCCGAGGGCGAAACCTTGTTGCCGCT GGCGCGCCAGTTGCTGGCCGACTGGGACAACACCGAAGAACTGCTGCGCCAGCGTTTTACGTTGCAAATGGGCAGGGTGTCGGTCGCCGCCATGCCGTCG TTTGCCGGCAATCTGCTGCCAGCGGCCTTGAAGGTGTTTCGTGGGCGCTACCCGCGCGTCAATGTCGCGGTGCATGACGTGATCAATGAGCAAGTGCTGG AGATGGTCCGACATCGCCGTGTCGAACTGGGTATCGGCTTTGAGCCCGAGTCGAACAGTGCCCTGTCGTTCACTCCGTTCTATATGGACCGCTTCGTCGC CGTGGTGCCCCGGGAGTCGCCGCTGGCCCAGCGGCGTGAGGTCACCTGGGAAGCACTGCTGCGTGAAGACTTCATCGCCCTGCAACGCCCTTCGGCGGTA CGTTTGCTGCTGGAACAGGCTATCGAGCCGCGCCACGGCAAGCTGGCGGTCGCGTTCGAGAGCCATCAGTTGTCGACCATCGGGCGCATGGTTGCCAATG GCCTGGGCGTCAGCGCGGTACCGTCACTGTGCATCGGGCAGATGCAGGAACTGGGGGCCTGCTGCGTGGCGCTGGTGGAGCCGCTGATCGAGCGGCGTAT CGGCCTGATGATGCTTGCCGATCACAAGCTTTCAACTGCGGCTCAAGCGTTGCGCGAGGTGTTGATCGAGAATGCTCGCAACAGTCGATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGACTATCACGGCGGATGATTTTTGCTGCGTCAGGGGCAGGCGTAACCTTGCTTCATTCCTGAAATGAAGCCCGACCGGAGGCCCCCGATGAACCGTATG CTCGCCCTTGCGCTTGTCCTGACATTCACTGTTGCGCTGGTTTCCGGCTGCTCCACTCACCACGCTGTCGAGCAGCGGGCGTTCAGCGCTGAAGAAAGCC ATCAGTTGGCTCTTGAAGACCTCAACCGTCGAGGCCTGTCATTTGATGAGTATCAGGCACGCAAGGCGCAATTGATGGCGGATCCGCAGATCCAGCAGGC GCGGGACTTCGATGAAACAGGCGAAACAAGCGTCGATCTGGGTGTCACCGGTCAGCAGCCACAAGGTTAACAGTCGGCTTGAAAAGTGCGTTGTGTAAGA ACTGTACTGCTGTAATTGGCCGTCAACTGTCCGTGTGTTTCCTGCACCGCCTTCGATAGGGTGAGCACCTGACTCACTGATCCGGACAGGCAGCATGTTT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPEGETLLPLARQLLADWDNTEELLRQRFTLQMGRVSVAAMPS FAGNLLPAALKVFRGRYPRVNVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPFYMDRFVAVVPRESPLAQRREVTWEALLREDFIALQRPSAV RLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAVPSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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