Pseudomonas syringae pv. syringae SM, PssSM_3133
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGACGCCACTGGTTCAAAGTACGCCCACACCGGTTTGTTCAGTGCGACCGCCATCCCGACTTCGAATGCGGTGCCTGAATCCGGCTCCAGACCACGGAA CACGTTGAGGTTGACCAGCATGGCAGTGCAGCGGTGGATCATCGCGACATTCATCGAGTAAATCTGCTGCGCGGTTTCATGCGCTGTCCGTCCGTGCGTG ACCTCATTGTCGAACGGGTACAAACCCTCAAGCCCGTGTGCGGCGCACAATGCCTTGAGATAGCGTCCATGTTCCACGGCGTCAGTCCTGAACACGTCGA AGCCTGCGAGATAAACCAGTGGCGCGTGCATATTCGTCTCTCGGCTGCAGATATTATCGCGCCGATTCTAAGGCGGACCGTCTGCTCGCGATACATGCCA TTGATCGGCTGGAACACGAACAGCAGGCGTTTACGCTGGAATCTGTACGGATAACCAGTATCCTTGTTCAGTCTGCTCATTTGTCATGTGAACGCTGGCC
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| DNA Sequence for Gene |
>PssSM_3133
TTGAATACTTCGCCCCTCGACAACCCGTTTTATTACCTGGAAAACTTCCGTCAGGTCCTTGGCTGGATTGCCCGGCGCTATGATGACCTGCTCGATGCGA GCGAGCGCCGCTTCATCAGCGAGTTTGCCGAGCTGCCGGTGCCCTCCCAGGGTTTGCTGGTGCGCATGGTGATGCGCAAAGGCGTGTTGTTTCGGGCCAG CAAACTCGGTTATGTCGAGATTGGCGACCCTCATGACGCGGTATTGCCGCTGCTGGCGCGGGAGTGGGTCGACAGCGCTCCGCCGCTGGGCCTGAGCGGG CTGTTCCAGCTGCTGCGTCGGGATGAGTTGAATCACTGCTTCAAAGACCACGCGGTCAAAGGCCCTGAGCGCAAACTGGAATGGCTCGAGCGCCTGCAGC CGATGTACCCGTCGCCGCAGTCCCTCGAACAATGGCACCCGACCTTGCCCGACGCTGTATTCGGCTTGAAGATCATGCCGCTGTGCGATCGCCTGCGCTT GCTGTACTTCGGCAATCTGTACCAGGAATGGTCTGAATTCGTGCTGGCTGACTTGGGTATCTACCGCTACGAGAAAGTCGAGTTTTCTCTGGAGTCGCGC GGCATCAATCAGCGTGCCGACATCGATGTGTGCCTGCAATTGCATGCCTGCCGGGAAGCGCTGGAAACCTGCCTGGAACTGCGTGCGCTGGCCGAGCGTG TCATTGCCATCGAGTGCGGTAACCCGTGGTTGCTCATGCGGCGCGGCAAACTGCTGTTTCGTATCGGGCAACAGGCCGAACGCATGCAGGACTGGCCTCT GGCGATGGCGGTGTATCGTCAGTCGGGTTATCCCGGCGCGCGCTCAAGGCAAATCCGCGTACTGGAGCGCAACGCCGAGTACGCAGCGGCGCTGGCGCTG GCGGAACAGGCCCGTCTTGCACCGGAAAGTGATGCGGAGGTCCAGCACCTGTCACGCGTATTGCCACGCCTGCAACGCAAGCTCGGCCTGACGGCAGTGC GCAAGCGCACGGTGCGCGCCATTGCGCGGCTGGACGTACAGGTCACGCCGGTGTCAGGGATGAGTGTCGAGCGCCTGATACGCCTGCACCTTGAAGAGGA GCAGGGCGGGGAGGTGCATTACGTCGAGAATGCGCTGATCAATTCACTCTTTGGACTGCTGTGTTGGCGGGCAATCTTCGCGCCCTTACCGGGTGCGTTT TTCCACCCGTTTCACAGCGCGCCGAGTGATCTCTACAGCCCTGACTTCTATCAGCGCAGGGCGACGCTGTTCGATGCCTGTCTGATGCAACTGGAGTCGG CTGAATACCTGGCGACCATTCGCGAGCATTTTGAAAGCAAACGCGGCCTGCAATCACCGTTTGTTTTCTGGGGTGCACTGACGCCGGAGCTTCTTGAACA GGCGCTTTACTGTTTGCCGGCAGAACACTTGCTTCGCTGGTTTCGTCGGCTGTTGCAGGACGTAAAAGCCAACCGTACAGGGATGCCCGACCTGATCCAG TTTTTTCCGGAACAGCGTCGTTATCGAATGATCGAGGTCAAGGGGCCGGGTGACCGCCTCCAGGACAACCAACTGCGCTGGCTGGACTTCTGTGCCGAGC ATGGCATGCCGGTGGAGGTGTGTTACGTGCAATGGGCGGCTGACGACAGTGTCTGTGTCAGTAGCGACCTGTCAGACCTTCAAGGGGCCTTGTGCCCATC TTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGTCCTGATGATCCGCATCATGGGGCTGTTTCGAATCATGAGGCTTGTCATCCGCACTGCCATTCTTTCCAGGCAAGGGGTCCATGCCTTTGGTGCCGG GGCTTGTGCTTGGCGCGCCGGGGCTGGTTCCATCGACGTTCTTTTCCATTCCGGTGCCCGGTACTTTCGGACCGTCGCTGACCGGGTTGGTCGGGCCGGT CGAACCCGCAAATGCACTGGTGCCCGACAGGGCCAAAAATGCCGCGAGGCTTATCGCCCCCAATCTATTCCTGATCATGGTGCAAACTCCGTGAGTACTT TGATTGAAACAGTGACGCGAGAAGGGTAGACCCGCGGGCAGGGCATGGTCCTGCCCGCGTAAGACGCCTGATTATTGAGTCTTGGTCTTTTCAGTGACGG TGCTCTTGTCGTGCGTGCCGTGTGTAGCCTTGTCGTGCTTCATCGAACGCTCGGCTGCCGCTTCTTTGCTTTCAGTCTGCACGCCTGGAGTCTCGGACGA
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| Amino Acid Sequence |
>VRR-NUC domain protein
MNTSPLDNPFYYLENFRQVLGWIARRYDDLLDASERRFISEFAELPVPSQGLLVRMVMRKGVLFRASKLGYVEIGDPHDAVLPLLAREWVDSAPPLGLSG LFQLLRRDELNHCFKDHAVKGPERKLEWLERLQPMYPSPQSLEQWHPTLPDAVFGLKIMPLCDRLRLLYFGNLYQEWSEFVLADLGIYRYEKVEFSLESR GINQRADIDVCLQLHACREALETCLELRALAERVIAIECGNPWLLMRRGKLLFRIGQQAERMQDWPLAMAVYRQSGYPGARSRQIRVLERNAEYAAALAL AEQARLAPESDAEVQHLSRVLPRLQRKLGLTAVRKRTVRAIARLDVQVTPVSGMSVERLIRLHLEEEQGGEVHYVENALINSLFGLLCWRAIFAPLPGAF FHPFHSAPSDLYSPDFYQRRATLFDACLMQLESAEYLATIREHFESKRGLQSPFVFWGALTPELLEQALYCLPAEHLLRWFRRLLQDVKANRTGMPDLIQ FFPEQRRYRMIEVKGPGDRLQDNQLRWLDFCAEHGMPVEVCYVQWAADDSVCVSSDLSDLQGALCPS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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