Pseudomonas syringae pv. syringae SM, PssSM_3110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAGGGCCAATGCAACAACCAGCCCGGCCAATACATCGGCACGAACGTTGGAAAACCACGCAGCTTTGATTTTTTCTAACATGGGAATACCTGTGACAG ACGCAGCAAGACGCACGGCAGCGATTGCCGGACGAGCAGGAGCATCGGTTTTCGATTAAGTAATCAGAGTGGGAGTGGCGGCGACCAAAAAACGGGCGCA GCAACGGGCGACCGCAGCAAGAAGGCAGTCAGGTGTTGCGAGGGGGCGTAGCGCTAAGGCGGCGTAGGCAGCCAGTTGGAACGGGACACGTCTATTTCCT TCGATGGGTCGTAAGGCGCTGGCATCATAGACCTATCCGTTTGAGGGGTTCAAGCGCAAGCCATCTCCCCGAACGACCTGAGTGACGGGTGGCGTAACAC TCTGCAACACCTGCAAAAGCCATCTGATCCTGTTTTTTACAGCCCTTTTGTCTCTGTTCGTCAGGGCCGGTTTCGCTCATGATGCAGCCTTGTCGATTCG
|
|
| DNA Sequence for Gene |
>PssSM_3110
ATGCCGCTTATGAAACGCTACGAAAAATTCGCCGCCGACATCTCGGAAATGATTCGCAGCGGCGTCCTGCCCGCCGGGGAAAAAGTCCCGTCCGTACGGG TCGCGAGTCGCACCTGGTCCGTCAGCCCGGCAACGGTCTTCAAGGCCTATTACCTGCTGGAAGACAAGGGACTGATTCAGGCCCGCGCGCGCTCCGGGTA TTACGTGCGCGAGCATGCCGCCAATGCACTGACCGAGCCTGAACTGATCAGACACACCAGCGAAGGCACCGAACTGGGCGTCAGCGACCTGATCTTTTCA GTGCTCGGCTCGCTCAAGGACCCGGACACCGTGCCGTTCGGCTCGGCGTTTCCCAGCCCGCACCTGTATCCGCTGGCGAGCCTGGCAAAGTCGATGGCGT CAGCTGTGCGTGCGCTGACGCCTGCGGGCATCGTCAGCGACATGACCACCGGGAATCCCGAACTGCGCCGACAGATCGCCCTGCGCTACATGATCAGTGG CGTGCGCTTGCCGGCTGACGAACTGGTCATCACCAATGGCGCGATGGAAGCCCTGAACCTGTGCCTGCAGTGCGTCACCGAGCCCGGCGACCTGGTCGCC ATCGAAGCCCCGGCGTTCTATGCCTGCCTTCAAGTGCTGGAGCGCCTGAAGCTGAAAGCCGTCGAAATCCCCGTGCATCCGCGTGACGGCGTGGACCTCG ACTCGCTGCAGGACAGCCTGACACGCCTGCCGATCAAGGCTTGCTGGTTCATGAGCAGCTTTCAGAACCCATTGGGCGCGAGCATGACTCAGGAAAACAG GATCAGGCTCTACGACCTGCTGGAACAGCATCAAATCCCGTTGATCGAGGACGATGTGTACGCCGAACTGTATTACGGCGCCAAGGCGCCTCACCCGGTG AAAAGCTTGGACCGCAGCGGACTGGTGATGCACTGCAGCTCGTTCTCCAAGACGCTCGCGCCCGGCTATCGGGTCGGCTGGGTGGCAGGCGGACGTTACA CCGAGCAGATTGACCGCCTCAAGCTCATGACCACCCTCTCCCCTTCGGTCCCCGCCCAGGCCGCGCTCGCCGACTACCTCAAGCATGGCGGCTATGACCG CCATCTGCGTAAACTGCGTGACACTCTCGAACTGCAACAAGGCGCGATGCTCGCCGCTGCCGCCCGCTATTTCCCGGCGGCGACACGCGTCACCCGCCCC GTCGGCGGCTACTTTCTGTGGTTCGAATTCCCCGAGCAGGTTGATTCGCTGCAGCTCTTTCAACTCGCGCTAGCGCAAGGCATCAGCCTCGCACCCGGCC CGATCTTTTCCGCGTCACGGCGCTTCAAGAATTGCGCGCGCCTCAACTACGGCACGCCCTGGGACGAACGCAGCGAGCAGGCCATGGCAATGCTGGGGCG TATCATCGCGTCATTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGTTTTCATGCCTTGCATAAAGGCAACTGATCCGTATTTTTAAGCTGTTTCTGAATCTGTACCAGAATCTGTATGAGCACGATAATGGCAGCGCTTTCA AACGCGCAGGCCAACCGCCAGAAGCGATACCTGCGGCTCGTTACAGACAGATCGATCAGCAGGAGACGCTCATGGGCAAGCTCGGACTTTCTTTGATAGG TTTTTTATTGTTGGCAATCGCGGTGGGTTTGTTGGGGACTATTTCGCCGTATTGAGGCGCCGCGAGCCAAGAATGCTGAAGCCGCGTCGCATTAGCGCCA AAACGAAAAAACCCGCCATTAGGCGGGTTTTTTCTTGTTCAAAGGCCTACACATCGCCTTTGAAATATATTCTGGCTCCACGACCTGGACTCGAACCAGG GACCCAGTGATTAACAGTCACTTGCTCTACCAACTGAGCTATCGCGGAATGAGCGCTATGTTACTGATTCGGAAAAGGAAGTCAAGCAGAGCAGAAAAAA
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator with aspartate aminotransferase domain
MPLMKRYEKFAADISEMIRSGVLPAGEKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQARARSGYYVREHAANALTEPELIRHTSEGTELGVSDLIFS VLGSLKDPDTVPFGSAFPSPHLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIALRYMISGVRLPADELVITNGAMEALNLCLQCVTEPGDLVA IEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSLTRLPIKACWFMSSFQNPLGASMTQENRIRLYDLLEQHQIPLIEDDVYAELYYGAKAPHPV KSLDRSGLVMHCSSFSKTLAPGYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYLKHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRP VGGYFLWFEFPEQVDSLQLFQLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|