Pseudomonas syringae pv. syringae SM, PssSM_3101

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTCTGGCATAGCGGCTAATTGTCGAGTGGTGTCCGACAACTAGCTGTTATTACTCATCCCGTTTTGCTCATGCGCCACACCACAGGGTTTGATCGAAAC CTGTTGCCTCTGTCTTACACCCTGGCCATGCAAAAAAGACCGCCGTCGCGGCTCCAGAGCCCTGGAAGGTCAGCATGCTTGCGCCTGTTTCCTTAGACCA TAGTCATTTTATTATTGTGTCTGCGGCCTTGAGCCGAGCCGGTTTTCGCGTAATAGCCGATTAGCATTTCTGCATATATTTAATTATGACCTTAATGCTA TGTCGAAAAGATACGCTGCGCCCTATCAATACTAAGCATATGACCCTTGGGCACTGGCTAAAAGTCAGTAATCCAAAAATCAACTTCAAAAAAAGTTCAA CAAATCGGATACAAGGTCGATACAAATATTTGACGCCACTATGATGGCGTTCTAATATTGCCCGCCTTTTGATATCAATATGCTACCGCAAGGAAGAGCC
DNA Sequence for Gene
>PssSM_3101
GTGTATCCTCATGCCCTCAAACTGGCTTTGCTGCTGCTGCTCGCCATCGCGCCAGCTACCTCGCTTGCAGCCACTGCTCCCGCCAGTTTGCCAGGTGACC AGGATCTTATTCGTGACCGTCAGGATCGCCTGCTCGAAGAGCAGCGCCGCCGTCTTGAAGAACTCAAGGATCTGCCGGGCAAACAAACCTCACCCGCTGC CCCGAGTTCTCCGGCCGATACACGTTGTTTCACCATCAATCGTATTGAGCTCAAGGGCGCCGACTCGCTGTCGGCCGCCGAGCGCGATGCGTTGACCAAG CCCTATATTGGCAAGTGCCTTGGTGTTGCGCAGCTCAATGAGCTGCTTAAAGTCATCACTGATCACTACCTCGAAAAAGGCCTGGTGACCACTCGCGCCT ACCTGCCGCAACAGGACCTGTCCACTGGCGACCTGCAAGTGCTGGTCATCGAAGGCAAGCTGGAGCATCTGCGTGGCGATCCTGCCAGCGGTCTGTCGGC GAGTGAGCTGGCCATGACGTTTCCCGGCAGTGAAGGGCGGATGGTCAACCTGCGCGAAATCGAGCAGATGGTCGATCAGCTCAATCGCCTGCCGTCCAAT CAGGCGCAGATGGAGCTGACCCCCGGTAAGGCCGTCGGTGGCAGTGACGTAGTGGTCAAGAACACTCCGCAAAAACCATGGCGGGCCAACCTGTCGCGTA CCAACGAAGGTCAGCGCAGCACCGGCGAGCAGCAATGGAACGCTGGCCTTGAGTGGGATAATCCGTCGGGGCTGGCCGACCAGTTCAGCCTGCGCGGCGG CCACGATGCGATCAGCGATCGGCAGAAAGCCTCCCGCAACGCCTCGCTTGCCTACAGCCTGCCGTGGGGCTGGTGGACGTTCAGCTACCTGTACAACACC AGTGAATATCGTTCGGTGGCGCAGGCCTCGAACGTCAACTTCAAGCAGGACGGCGATAGCCAGAACCACCAGTTCAAGGCCGAGCGGGTCGTGTACCGCG ACGCGCTGAGCAAGACCTCGCTCAATGCCGGTCTGTCCTACCTGCGCACCAACAATTATGTCGAAAGCAGCAAGCTGGCAGTCAGCAGCAATCGCATCAC CGAGGCGCAGTTCGGCATCAACCACGGTCGGCGGGTCGGCTCGGCGTTCGTCAACATCGATCTGGGCATGCAGCAAGGCATCGGTGCACTGGACGCGCAG GGCAACCACGATCCTCGCCCGGGTGAGGCCGATGCGCGGTATCGCAAATACACCGGCACCCTCAGCTATCTGCACCCCTTTCAACTGTGGGGCGAAAACC TCAGCTTCACCAGCCTGGCCACCGGGCAGCGCAGTGAGGATGTGCTGTTCAGTTCGCAACGCACCAGCCTGGGCGGATCGGCATCGGTGCGTGGTTACAA GGATGAGTTTCTGTCTGGCGACAGCGGTGGTTACTGGCGTAACGAGTTACGCCTGACTCGCCCGGTCACCCTGGACTGGCTGCGCCCGGTGTTCGCCGAG TATGGCGCGGCCGCCGGTTACGACCAGGGTGTTATCCGCAATGACCGTTACAACGGCAATCAGCATGGGCGCTTGTCCAGTAACTCGTTCGAGCTGTTTA CGCGTGGCCAGCACGTTGCTGCCTCAGTGACGTTCGCTCATTCCCTGGAACGTCCCGATGTGATCGAGCGCGAAGCGCCGATCTATTTCCGTATGGACTT CTTTCTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TAGCGCCGTTTTCAACCTACCTGTTTCGAGGTCATCTACATGGACGTCCACCAACTGGCTCTGCTTGCTCGTCAGCCTTCTGCTGTGCTGGTCGAGCGCC GGTCTTTCTGGGGAATGCCCAAGCGCGGCCTCGCGCTGATTCTCGCCAATGCGATGTTCTGGCAGCCGATGCTGGTTCAAGCCGAAGGCATCGTGGTCAG CGGCACGAATACCAGTCTGAACCAGGCCGGCAATGGCGTGCCTATCGTCAACATCGCCGCGCCTAATGCCAGCGGCCTATCACACAACCAGTATCAGCAG TTCAACGTCGACAGCCAGGGCGTCATCCTCAACAACTCCACCAACCAGACCCAGAGCACCCAACTGGGCGGCATCATCGTCGGCAACTCCAACCTGCGCG GCACGGCGGCCAGCACCATCCTCAACGAAGTGGTCGGGGCCAACGCCAGTCAGCTCAGGGGCTATACGGAAGTGGCCGGGCAGGCGGCGCGTGTCATCGT
Amino Acid Sequence
>Adhesin/hemolysin activation/secretion protein, FhaC/HecB/ShlB family
MYPHALKLALLLLLAIAPATSLAATAPASLPGDQDLIRDRQDRLLEEQRRRLEELKDLPGKQTSPAAPSSPADTRCFTINRIELKGADSLSAAERDALTK PYIGKCLGVAQLNELLKVITDHYLEKGLVTTRAYLPQQDLSTGDLQVLVIEGKLEHLRGDPASGLSASELAMTFPGSEGRMVNLREIEQMVDQLNRLPSN QAQMELTPGKAVGGSDVVVKNTPQKPWRANLSRTNEGQRSTGEQQWNAGLEWDNPSGLADQFSLRGGHDAISDRQKASRNASLAYSLPWGWWTFSYLYNT SEYRSVAQASNVNFKQDGDSQNHQFKAERVVYRDALSKTSLNAGLSYLRTNNYVESSKLAVSSNRITEAQFGINHGRRVGSAFVNIDLGMQQGIGALDAQ GNHDPRPGEADARYRKYTGTLSYLHPFQLWGENLSFTSLATGQRSEDVLFSSQRTSLGGSASVRGYKDEFLSGDSGGYWRNELRLTRPVTLDWLRPVFAE YGAAAGYDQGVIRNDRYNGNQHGRLSSNSFELFTRGQHVAASVTFAHSLERPDVIEREAPIYFRMDFFL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site