Pseudomonas syringae pv. syringae SM, PssSM_2991 (mexF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCAGATGAACTTTGTCGACAACCAGGTCAACCCGAGGACCGGCACCATTCGTGGCCGCGCCGTGTTCGATAACGCCGACGGTGCGTTTACCCCCGGCCT GTATGCGCGCCTGAAACTGGTGGGCAGCGGCACTTACTCGGCCGTGCTGATCAACGACGAAGCGGTGGGCACCGACTTGGGCAAGAAGTTCGTGCTGGTC ATGGACAAGGACAACAAGCCCGCCTACCGGGCTGTCGAGCTGGGGCCGAAAATCGAAGGCCTGCGCATTGTGCGCAATGGTCTGGCCAAGGATGACACCA TCGTCGTCAAAGGCTTGCAGCGCGTTCGTCCCGGCCAGCCTGTGGACCCTGAAGTCACTCCGATGGCCAGCGCCGACACCCTCGCCGCACTGCTCAAACA ACGCCAGGCCCTCGAAGCCAGCAACCTGCCACAAGTGGCGCCCAAAGCGGCCGTCAAAATCGCCAGCGCTGCCGCGCCGCGCGGCTAAGGGACTCGTCCG
DNA Sequence for Gene
>PssSM_2991 |mexF
ATGAACTTCTCCAAATTCTTTATTTCACGGCCGATCTTCGCCGCAGTGCTGTCGCTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGCTACCGA TCAGTGAATACCCGGAAGTCGTGCCGCCAACCGTGGTGGTACGCGCCAACTTCCCCGGCGCCAACCCTAAGGTGATCGGCGAAACCGTGGCCTCGCCACT GGAACAGGCGATTACCGGTGTCGAAGGCATGCTCTACATGTCCTCGCAGGCCACCGCCGATGGCAAGCTGACCCTCACCATCACCTTCGCACTGGGGACC GACCTGGACAACGCGCAGGTGCAGGTGCAGAACCGCGTGACCCGCAGCGAGCCGAAGCTGCCTGAAGAAGTGACACGCATCGGCATCACTGTGGACAAGG CCTCCCCCGACCTGACCATGGTCGTGCACTTGACCTCACCGGACAAACGCTACGACATGCTGTACCTGTCCAACTACGCCGTGCTCAACATCAAGGATGA GCTGGCGCGACTGGGCGGCGTCGGTGACGTGCAATTGTTCGGCATGGGCGATTATTCGCTGCGGGTCTGGCTCGATCCGAACAAGACCGCCTCACGCAAC CTGACCGCCACTGACGTGGTCAATGCGATTCGCGAACAGAACCGTCAGGTCGCCGCTGGCCAGCTGGGTTCTCCGCCATCGCCGAATGCCACCAGCTTTC AGATGTCGATCAACACTCAGGGCCGCCTGGTCAGTGAGGAAGAGTTCGAAAACGTGGTCGTGCGAGCCGGTGCCGATGGCGAAATCACTCGCCTCAAGGA CATTGCACGCATCGAACTGGGCTCCAGCCAGTACGCGCTGCGCTCGTTGCTCAATAATCAGCCTGCGGTAGCGATCCCGATCTTCCAGCGTCCCGGCTCT AACGCCATCGACATCTCCAACGATGTACGCGCACGGATGGCCGAGCTCAAGAAAAGCTTCCCGGAAGGCATGGACTACAGCATCGTCTATGACCCGACGA TCTTCGTCCGCGGCTCCATCGAGGCAGTGATTCACACACTGTTCGAAGCACTCATCCTGGTGGTGCTGGTGGTAATCCTGTTCCTGCAGACCTGGCGCGC ATCGATCATCCCGTTGGTGGCCGTACCGGTCTCGTTGATCGGCACCTTTGCGGTCATGCATATGTTCGGTTTCTCGCTGAACGCGCTGTCGTTGTTCGGC CTGGTGCTGGCGATCGGTATCGTGGTCGACGATGCCATCGTGGTGGTGGAGAACGTCGAGCGTAACATCGAGCTGGGCCTGGAGCCGGTCGCCGCCACGC ACAAGGCCATGGCCGAAGTCACGGGGCCGATCATTGCGACGGCGCTGGTGCTGTGCGCCGTGTTCGTGCCTGCGGCATTCATTTCCGGGCTCAGCGGGCA GTTCTATAAGCAGTTCGCGCTGACCATTGCCATTTCGACGGTCATTTCCGCCTTCAACTCGCTGACCCTGTCGCCTGCACTGGCGGCGGTATTGCTCAAA GGTCATGACGCGCCCAAGGATCGCTTCTCACGCTTCCTCGACAGAATGCTCGGCAGCTGGCTGTTCCGCCCGTTCAACCGCTTTTTCGAGAAAGCCAGCC ATGGCTATGTCGGTACGGTTGCCAGGGTTATTCGCAGCAGCGGCATTGCCTTGCTGGTCTATGCGGGCCTGATGGTTTTGACCTGGATGGGTTTCGCCAG CACACCGACCGGTTTCGTCCCGAGCCAGGACAAGCAATACCTGGTTGCATTTGCTCAACTGCCGGACGCCGCGAGCCTGGACCGTACCGAAGATGTCATC AAACGCATGTCGGAGCTGGCCCTCAAGCAGCCTGGCGTACAAGACGCCATTGCCTTCCCGGGTCTGTCGATCAACGGCTTCACCAACAGCCCGAATAACG GCGTGGTGTTCGTGACCCTCAAGCCGTTCGACGAGCGCAAGGACCCGAGCCTCTCGGCCAATGCAATTGCCGGCGCGCTGAACGGTCAGTTTGCCTCGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCACCGGTACAAGGCCTGGGCACCATCGGCGGCTTCCGCCTGCAAATCGAGGACCGTGGCAACCTCGGC TATGACGAACTGTACAAGGAAACCCAGAACATCATCGCCAAAAGCCGCAGCGTGCCGGAACTGGCCGGGCTGTTTACCAGCTACACGGTGAACGTACCGC AAGTCGATGCTGCGATTGACCGCGAGAAAGCCAAGACCCACGGCGTTGCAGTCAGTGATATTTTCGACACGCTGCAGGTGTATCTGGGTTCGCTGTATGC CAACGACTTCAACCGGTTTGGCCGCACCTATCAAGTCAATGTCCAGGCTGAGCAGCAGTTCCGTCAGGATGCCGACCAGATCGGTCAGCTCAAGGTACGC AATAACCTGGGCGAGATGATCCCGCTGGCAACCTTCGTCAAGGTCAGCGACACCGCCGGCCCTGACCGCGTCATGCACTACAACGGCTTCATCACTGCTG AAATCAACGGTGCAGCGGCACCGGGTTACAGCTCTGGCCAGGCTCAGGCAGCGGTCGAGAAACTGCTTCGCGAGGAACTGCCGACCGGCATGATCTACGA ATGGACCGACCTGACCTATCAGCAGATCCTTTCGGGCAATACCGCGCTGTTCGTGTTCCCGCTCTGTGTGCTGCTGGCGTTTCTGGTACTGGCAGCCCAA TACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTCTCGGCGATTGCCGGGGTGATGATCGCCGGCAGCGACAACAACA TCTTCACTCAGATCGGCCTGATCGTACTGGTAGGCCTGGCGTGCAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGACAAACAGGCTGAAGGGATGAG CCCGCTGGATGCGGTACTGGAGGCATGCCGCCTGCGTCTACGGCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGGGTCGTGCCTCTGGTGCTGTCC AGCGGTGCGGGTGCCGAGATGCGCCATGCGATGGGTGTCGCAGTGTTCTCCGGGATGCTGGGTGTCACGTTCTTCGGCCTGCTGCTGACGCCGGCGTTCT ACGTGCTTATCCGTAATTACGTCGAACGCCAGGAGGCCCGCAAGGCCGCCAGGGTAAACAGCCAGCAAAACCTGCCTGCGGAGATGCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGAGCGCGTACAAAGTCTTCATCCCGAGCCTGCTGGTCATGGCACTGGCGGCCTGCGCCGTGGGCCCCGACTACCGGGCACCGGTTACGGCGCCAGCGAA ACTGGCGTCCGCCGCCCAGGGCAGCTATGACCGCAGCAAAGTGGACAGAGCCTGGTGGCAGCAGTTCGAGGACCCGACCCTCAATAAACTGGTAGCCAGG TCACTGGACGGCAACCGCGATCTGCGCGTCGCCTTCGCCCGGCTCAAGTCGGCGCGAGCCATTCGCGATGACGTCGCCAACGATGTGATGCCAGTAGTAA CCAGTCGCGCCAGCAGTGACATCGGCAAGGGTCAGCAACCCGGCATCACCGAGCGCCGAGTCAACAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTG GGAAGTGGACTTGTTCGGGCGCATCCAGCGCCAGCTGGAAGCCAGCGACGCCGATCAGGAATCTGCAGAGGCCAACCTCTATCAGCTTCAGGTCACCCTG
Amino Acid Sequence
>RND-type multidrug efflux system, inner membrane protein MexF
MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGT DLDNAQVQVQNRVTRSEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQMSINTQGRLVSEEEFENVVVRAGADGEITRLKDIARIELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK GHDAPKDRFSRFLDRMLGSWLFRPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVI KRMSELALKQPGVQDAIAFPGLSINGFTNSPNNGVVFVTLKPFDERKDPSLSANAIAGALNGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETQNIIAKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRQDADQIGQLKVR NNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGYSSGQAQAAVEKLLREELPTGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPAFYVLIRNYVERQEARKAARVNSQQNLPAEMH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site