Pseudomonas syringae pv. syringae SM, PssSM_2948 (pilT-2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGACGGCGCCATTTCGCCGAACTGATTGCCGCGCTGGTCAATGCCCGAAAAACCTCGAACCGCGCTCGGTTCGGGGTTTTTCAGCTTTTGAACGGTGT TTCAGTCGCGATAGAACACCTGCACCAGGTGATAGCCGAATTTGCTTTTGATTGGCCCATGCACGACGCGCAACGGCTTTTTGAAGATCACCTGATCGAT GGCACCGACCATTTGCCCAGGCCTGACTTCGCCCAGATCGCCGCCACGTTTGCCGGACGGGCAGCTAGAATGCTTTTTAGCCAGCACGTCAAATGCCTCA CCCTTGGCAATGCGCAGCTTGAGCTGTTCGGCCTCTTCGGCGGTCTTCACCAGAATATGGCGGGCTTGGGCTTTCATGTCGCAATATCACCTGCTGCAAA AGGCTGCCATTATGCCTGCTCTTGCTGAGCGACGCCCGCACGTCACGCGTGCCGTCCTGACGGCCGTGGTCTTTTTACTTCATTTTGTACGGTATTGATT
|
|
| DNA Sequence for Gene |
>PssSM_2948
|pilT-2
ATGGATTTCCCGGCGCTGTTGAAGATTCTGGCCAGTCAGGACGGATCGGACCTGTACCTCTCCACCGGAGCACCACCGTGCGCCAAGTTCAACGGTGTGC TCAAGCCACTGGGCAGCGAAACCTTCAAGCCGGGGGAGGTCGCAGTCATTGCCCAGGCGCTTATGGACGAGGAGCAGAAGCTCGAGTTTCAGCGCGAACT GGAGATGAACCTCGCCGTTTCTATGGCGGGTATCGGCCGGTTCCGGATCAATATCTTCATGCAGCGCAACGAGGTGTCCATCGTCGCGCGGAATATCAAG CTGGACATCCCGCGTTTCGAAGACCTGTTCCTGCCGCCCGTGCTGCTCGACGTGATCATGGAGAAGCGCGGTCTGGTGTTGTTTGTCGGGGCCACCGGTT CCGGGAAATCGACCTCTTTGGCGGCGCTGATCGACTACCGTAACCGCAACGCCAGTGGCCATATCATCACCATTGAAGACCCGGTCGAGTTCATCCATCG CCACAAGAAGTCGATCGTCAACCAGCGCGAAGTCGGGGTCGATACTCGCAGCTTCCATGCGGCACTGAAGAACACCCTGCGCCAAGCGCCGGATGTGATT CTGATCGGCGAGATTCGTGATCGCGAGACCATGGAGCATGCGCTGGCGTTTGCCGACACCGGCCACCTGGCGATCTCGACACTGCACGCCAACAACGCCA ACCAGGCGCTGGACCGCATCATCAATTTCTTCCCGGAAGAGCGTCGCGCGCAGTTGCTGCATGACCTGGGCAACAACCTCAAGGCATTCGTCTCTCAGCG ACTGGTCAGAACCCCGGATGGCAAGCGTCGTGCGGCGGTGGAAGTGATGATGGGCACGCCGACCATTCGCGACCTGATTCAGCGCAATGAACTGACCGAA CTCAAGGGCATCATGGAGAAGTCCGGCAGCCTCGGTATGCAGACGTTCGACACGGCGCTATTCAATCTGGCCGTTGAGGGTGCAATCAGCGAAGAAGAAG CCCTCAAGAACGCTGACTCGCAAAACAACGTGCGCCTGCGCCTCAAACTGCACAGTGAAGGCGGCGCCGGGACCCTGACTACACCGCCGCCGGCCCCGAC CGGCAGCAGTACGGCAAGCACCGCCGAGTGGGGGCTGGTCGATGATGACGCGCCGGGTCCGCAGGCTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATCGGTGACGCTCCTAAGCCCTCCGGGCAGAAGCTTCGTTGTGGGCCAGATCATTCCGGATGCGCGGCCGCCAGCAATTCCTGCGTGTATGGGTGCTGCG GCGCATCGAAGACATCATGGCTGGCGCCACGCTCGACGACTTTGCCGTCCTTGACCACGATCACGTCGTGGGCGAGGGCTTTGACCACTGCCAGGTCATG GCTGATGAACAGATACGTCAGGCCATGCTTTTCCTGAAGTTCGCGCAACAGCGCCACAACCTGTTTCTGCACGGTGCGGTCCAGCGCCGATGTCGGCTCA TCGAGCAGAATCAGTGCGGGTTTCAGCACCAGCGCCCGGGCAATGGCGATGCGCTGACGCTGGCCACCGGAAAACTCATGGGGATAGCGGTGCCGGCTCT GCGGGTCGATGCCGACTTCTTCCAGCGCCCGAATGACCTCTGCATCGCATTTCGCCGGGTTGTACTGGCTGTGCACCTCCAGTCCTTCACTGATGATCTG
|
|
| Amino Acid Sequence |
>pilus retraction protein PilT
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGSETFKPGEVAVIAQALMDEEQKLEFQRELEMNLAVSMAGIGRFRINIFMQRNEVSIVARNIK LDIPRFEDLFLPPVLLDVIMEKRGLVLFVGATGSGKSTSLAALIDYRNRNASGHIITIEDPVEFIHRHKKSIVNQREVGVDTRSFHAALKNTLRQAPDVI LIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRIINFFPEERRAQLLHDLGNNLKAFVSQRLVRTPDGKRRAAVEVMMGTPTIRDLIQRNELTE LKGIMEKSGSLGMQTFDTALFNLAVEGAISEEEALKNADSQNNVRLRLKLHSEGGAGTLTTPPPAPTGSSTASTAEWGLVDDDAPGPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|