Pseudomonas syringae pv. syringae SM, PssSM_2165 (oprF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAGGTGATGCTTAAAGTGTTGTATGGGTTGAAAAATTTTGAAGGTAAATCTAAATTTAAAACCTGGCTGTACAGCATCACCTACAATGAATGCATCAC GCAGTACAGGAAGGAACGGCGTAAGCGTCGCTTGATGGACGCGCTGAGTCTGGATCCACTTGAGGAAGCGTCGGAAGAAAAGGCGCCCAAACCTGAAGAA CGGGGCGGACTTGATCGCTGGCTTGTGTATGTGAACCCGATCGATCGGGAGATTCTGGTCCTGCGTTTTGTTGCAGAACTTGAATTCCAGGAGATCGCTG ACATCATGCACATGGGCTTGAGCGCAACGAAAATGCGTTACAAGCGGGCTTTAGATAAATTACGAGAGAAATTTGCGGGAATCGCCGAAACTTAATACGG TGCAAATATCTCTAACAAACTGGCAAGGTCTGGTAGACTTGCCGCTGAGTTGTCCCCATGTGTGGGACTGCTTAATAATCATCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>PssSM_2165
|oprF
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTACTATTGTTGCCGCAACTTCGTTCGGCGCGCTGGCTCAAGGCCAAGGCGCAGTCGAAATCGAAG GCTTCGCCAAGAAAGAAATGTACGACAGCGCCCGTGATTTCAAAAACAACGGCAACCTGTTCGGCGGCTCGATTGGCTACTTCCTGACCGACGACGTTGA ATTGCGTCTGGGCTACGACGAAGTCCACAACGTTCGTAGCGATGATGGCAAGAACATCAAGGGCGCAGACACTGCCCTGGACGCTCTCTACCACTTCAAC AACCCAGGCGACATGCTGCGTCCATACGTTTCTGCCGGTTTCTCCGACCAGAGCATTGGCCAGAACGGTCGTAACGGTCGTAACGGTTCTACCTTCGCCA ACATCGGCGGCGGCGCCAAGCTCTACTTCACTGATAACTTCTACGCCCGTGCTGGCGTTGAAGCTCAATACAACATCGACCAAGGCGACACCGAGTGGGC TCCAAGCGTCGGTATCGGCGTAAACTTCGGTGGCGGCAGCAAGAAAGTTGAAGCAGCACCAGCTCCAGTAGCTGAAGTGTGCTCCGACAGCGACAACGAC GGCGTGTGCGACAACGTCGACAAATGCCCGGACACCCCAGCCAACGTTACCGTTGACGCTGATGGCTGCCCAGCAGTTGCCGAAGTGGTTCGTGTTGAGC TGGACGTGAAGTTCGATTTCGACAAATCCGTAGTCAAGCCTAACAGCTACGGCGACATCAAGAACCTCGCTGACTTCATGCAGCAGTACCCACAGACCAC CACCACTGTTGAAGGTCATACTGACTCCGTCGGTCCTGACGCTTACAACCAAAAACTGTCCGAGCGTCGTGCAAACGCCGTTAAACAGGTTCTGGTTAAC CAGTACGGTGTTGGCGCTAGCCGCGTAAACTCGGTTGGTTACGGCGAAAGCAAGCCAGTTGCTGATAACGCAACTGAAGCTGGCCGCGCAGTTAACCGTC GCGTAGAAGCAGAAGTAGAAGCTCAAGCTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAGCCGCTTGTACTGAAAAGCCCGGCTTAGGCCGGGCTTTTCTTTGCCTGCGATTTGGCATTGCGTCTGTTCAGGCGGGCTTGATGTCAGCCGGCATTC AGCTGTGCGTGGTCCATCAGCGTTTGATTCAGCAGCTCATTGCTGTACGCGGCAACCGCGCCGATCACCAGAATGGCGGGGCTCTTCAATTGGAAAGCGG CTGCGTCCTGTTGCATGTCATTCAGGGAGCTGCGGCATTCGCGCTGCCACGGCAGCGAAGCGTTCTCGATCATCGCCACCGGCATCTCGCCACTCATTCC GCCTGCCAGCAGGCTCTCGCGAATTTCCGCCAGTTTCGCCACGCCCATGTAAACCACCAGGGTGGTTCCGCCTTGCGCGAGCGCCTGCCAGTTGAGGGTG CTGTCGTCCTGAGTGTGAGCGGTGACCAGCGTCACGCCACGGCTAATACCCCGCAGGGTCAGCGAAATGCCGCACTGTGTTGCACCGGCAAGACCCGCTG
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| Amino Acid Sequence |
>outer membrane porin OprF
MKLKNTLGLAIGTIVAATSFGALAQGQGAVEIEGFAKKEMYDSARDFKNNGNLFGGSIGYFLTDDVELRLGYDEVHNVRSDDGKNIKGADTALDALYHFN NPGDMLRPYVSAGFSDQSIGQNGRNGRNGSTFANIGGGAKLYFTDNFYARAGVEAQYNIDQGDTEWAPSVGIGVNFGGGSKKVEAAPAPVAEVCSDSDND GVCDNVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRANAVKQVLVN QYGVGASRVNSVGYGESKPVADNATEAGRAVNRRVEAEVEAQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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