Pseudomonas syringae pv. syringae SM, PssSM_2138
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGGCAAGTTGCTGGAAAATGTCTGGCCGAGCCTGAAACCGCTGCTTTGAGGCTTTCCCGGGCGGGGGCTTTCGGCTAATGTGGCGCCCCCGATCTGGAG CCCCCCATGCCGCGTCCCGCCTGGTCCCTGTATGCCTATCAAATGCTTGAACCCGATGAGCAGCTGGATCTGTTCGCCTGTCAGGAAGTGCGCGTCCATC TGATCGCTCGCCAATTGGAGCTGGGCGGCTCGATCGACCGTACATTGTGTGGCACGTTGCTGCCAGCCCAGCCGCAAATGCGCGCCGTCGAACTGCAGGC CATGCGCGATGAGCGTCTGTGTCCCTTGTGCAAGGCCATCATGGATGCGCAGCGCAGGGGTATGAATCCGATCTGGCCTGAACTCTAGCTGTCATCACTG CCGGAAGGCCAGCCGCAGATATCCCCGATCTGGCAAGGGCCGGTGTACACTTCAGTTCTTGCTTCCATCTCTTTAGTCGTTACCCGAAGGATCTTCCCGG
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| DNA Sequence for Gene |
>PssSM_2138
ATGTTGTCGCGCATTCCAGCCGTTACCCGCTGTCTGTCGCTTGCTGCTCTGTGCGCGGCGAGCTCTGTCCATGCACTGGAGTTTCCGTTGCCGCCGCCCG GCGAAGACATCGTGGGGCAGGTGCAGGTCATCAAGGCCAAATACGAAGACACCTTCGCCGATCTGGGCACCCAATATGATCTGGGCTACCTGGAAATGAT CGCTGCCAACCCTGGCGTCGACCCCTGGTTGCCGGGTGCAGGCAAGGACATCGTGCTGCCGACCCGTTTCATTCTGCCGCCGGGTCCGCGCGAAGGGATT GTCATCAACCTTGCCGAATACCGCATGTATTACTACCCCAAGGGGCAGAATGTGGTGCACACCTATCCGCTGGGTGTCGGTCGTGAAGGCTGGGGGTCGC CGATTGGCGTGACCAAGGTGACAGCCAAGACACCCAACCCGACCTGGACGCCGCCGGCCTCGATCAAGGCCGAGCATGCGGCCGATGGCGATCCGCTGCC GGACGTAGTGCCTGCCGGACCCGACAACCCGCTGGGGCCGTTCAAGTTCGGTCTGGGGCTTTCCGGCTACCTGATCCACGGCTCGAACAAGAAGTTCGGC ATCGGCATGCGCACCAGCCATGGCTGTTTCCGCATGTACAACAATAACGTGCTGGAACTGGCCGACATGGCCCCGGTCGGTACGACCGTGCGCATCATCA GCGAGCCCTACAAGTTCGGCATCAGCGGCGGCAAGGTTTACCTGGAAGCGCATACGCCGGTTGATGACCTGGGCAACCCGTCGGTGGTCGACAAGCACAC TGCGGTGATCAATGCGCTGCTCAAGCGTGACGACCTGGCCAACAACCTGCGCATGAACTGGGATGTGGTACGTGATGTGGTTGCGGCCGAAGACGGCATG CCGGTGGAGATCGCCGAACCGGGCAAAGCGCCTGAGAATGCTGAAGACCCGGTGATTTTTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGTCACCAGCAATTGCTGTTGTGCCAATGCGGAGTTTTGGCAAAAATTAGTTATCTTCCTGATACAGCAGAACAGTCATTCAGGCTTGCGCAGGCAAT CACCGAGCCAGAAAACAGGCAAAAAAAAGCCGACCCGTTACCGGGTCGGCTTTCAATAATCCCGGGGGATTATTACTTGCGGCTGGCTTTGTCCAACATG CGCAGAGCGCGCTCGTTGGCTTCGTCAGCAGTTTGCTGAGCTTTTTGAGCAGCAGCCATAGCTTCGTCAGCCTTGCGGTAGGCTTCGTCGGCACGTGCTT GCGAACGAGCTGCTGCGTCTTCGGTAGCTGTCAGACGAGCTTCGGTTTCTTTGGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGAGCCAGAGC AGAGAATTTCAGAACGTTGTTCATCGTGTTCACCTTCAAGGAATTTTTTTTCAAATTAGTCATCTCTCGAAAATGAGAAAACGACCGGCGTACATAGTAC
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| Amino Acid Sequence |
>Putative L,D-transpeptidase
MLSRIPAVTRCLSLAALCAASSVHALEFPLPPPGEDIVGQVQVIKAKYEDTFADLGTQYDLGYLEMIAANPGVDPWLPGAGKDIVLPTRFILPPGPREGI VINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASIKAEHAADGDPLPDVVPAGPDNPLGPFKFGLGLSGYLIHGSNKKFG IGMRTSHGCFRMYNNNVLELADMAPVGTTVRIISEPYKFGISGGKVYLEAHTPVDDLGNPSVVDKHTAVINALLKRDDLANNLRMNWDVVRDVVAAEDGM PVEIAEPGKAPENAEDPVIFQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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