Pseudomonas syringae pv. syringae SM, PssSM_1785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTGGGCCAGCGCTTCCTCGAGGTCTGGTCGGGTCTGCCGGTGCTGTATCTGCTGATCATCCTCGCCAGCTTCGTACAACCCAACTTCTGGTGGTTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGCCTGGTGGACGTGGTGCGTGCCGAGTTCCTGCGTGGCCGCAATCTGGAATACGTAAGGGCCGCGCGGGCGC TGGGCATGGAGAACGGCGCGATCATGTTCCGCCACATCCTGCCCAACGCCATGGTGTCGACCATGACCTTTCTGCCGTTCATTCTCACCGGCGCCATCGG CACCCTCACGGCGTTGGACTTTCTGGGCTTCGGCCTGCCCGCCGGCTCGCCGTCTCTGGGCGAGCTGGTAGCGCAGGGTAAGTCCAACCTGCAGGCACCC TGGCTGGGCATCAGCGCGTTCGCTGTGCTGGCCATCATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGATGCTTTCGACCCAAGGAAATAAG
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| DNA Sequence for Gene |
>PssSM_1785
ATGAACAATGACAATCTGATCGAAATCCGCGATCTGGCGGTCGAGTTCGTGACGGGCGACTCACGGCAACGCGTGGTGGAGAACATCAGCTTCGATATTC GTCGCGGTGAAACGCTTGCACTGGTCGGCGAAAGCGGTTCGGGCAAGTCAGTGACCGCGCACTCGATCCTGCGCCTGCTGCCCTACCCCATCGCCAGCCA CCCGAGCGGCACGATCCGCTACGCGGGTGAAGACCTGCTGAAAGTGGAAGAGAAAAAACTGCGCACGATCCGCGGCAACCGGATCGCCATGATCTTCCAG GAGCCAATGACCTCGCTCAACCCGCTGCACTCGGTGGAAAAACAGATCAATGAGGTACTGGGCCTGCACAAGGGCCTGACCGGCAAGGCGGCCACCGAGC GCACGCTGGAGCTGCTTGAACTGGTTGGCATCCCTGAGCCACACAAGCGCCTCAAAGCGCTGCCACACGAGCTGTCAGGTGGCCAGCGTCAGCGCGTGAT GATCGCCATGGCCCTGGCCAACGAACCCGAGCTGCTGATTGCCGATGAACCGACCACCGCGCTGGATGTGACGGTACAGCTGAAGATCCTCGAATTGCTC AAGCAGTTGCAGGCTCGCCTGGGTATGGCACTGCTGCTTATCAGCCACGATCTGAACGTCGTAAGGCAAATAGCCAATCGAGTATGTGTCATGCAGCGCG GTTGCATCGTCGAACAGGCATCGTGCGAAGAATTGTTCCGTTCGCCGCAACATCCTTACACCAAAGTGTTGCTCAGCGCCGAGCCCAGCGGCGGTCCTTC GACCAACCCCGCGGGTGCTCCGCTGCTTGAAATCGAGGACCTGAAAGTCTGGTTCCCGATCAAAAAAGGCCTGCTCAAGCGCACGGTCGACCACGTCAAG GCGGTGGACGGCATACGTTTCAGCCTGCCGGAAGGGCAAACGCTGGGTATTGTGGGTGAAAGCGGTTCGGGCAAATCGACGCTGGGCCTGGCGATTCTCA GGCTGATCGGCAGTCAGGGCACCATACGGTTCAAGGGCAACGCGCTAGAATCCTTGTCGCAACAGCAGATCCGTCCGCTGCGCAGGCAGATGCAAGTGGT TTTCCAGGACCCGTTTGGCAGTTTGAGTCCGCGTATGTCGGTGTCTGAAATCGTTGGCGAAGGCTTGCGAATCCACGGCATGGGTACGGCCGCCGAACAG CAGACGGCGATCATCGAAGCGCTCAAAGAGGTTGGTCTGGACCCGGATACCCGGCACCGCTACCCTCACGAGTTCTCCGGTGGCCAGCGCCAGCGGATCG CCATTGCACGTGCGCTGGTCTTGAAGCCGGCGCTGATTTTGCTGGACGAGCCGACCTCGGCCCTCGACCGGACCGTACAGCGTCAGGTCGTCGAGTTGCT TCGCTCGCTGCAAACCAAGTACAACCTGACGTATTTGTTCATCAGCCATGACCTGGCTGTCGTCAAAGCGCTAAGCCACCAGTTGATGGTGGTCAAGCAA GGCCAAGTGGTCGAACAGGGTGCAGCGCAGGATATCTTCGCCGCACCGCAACATCCTTATACACAGCAGCTGCTGGAGGCCGCCTTTTTGGCGCCGGTAG CTGTCGATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGAAGAGGAACAACACATGGGTTTTCTCGCCGGTAAGCGCGTCCTGATCGTCGGTGTCGCCAGTAAACTGTCCATCGCATCCGGCATTGCCGCCGCCA TGCATCGTGAAGGCGCAGAGCTTGCCTTCACCTACCAGAACGACAAACTCAAGGGTCGTGTCGAAGAGTTCGCTGCAGGCTGGGGTTCGGGTCCTGAGCT GTGCTTCCCTTGCGACGTGGCCAGCGACGAAGAGATCAACAAGGTCTTCGAAGAGCTGAGCAAGAAATGGGACGGCCTGGACGTGATCGTTCACTCGGTC GGCTTCGCGCCTGGCGACCAGCTCGATGGCGACTTCACCGAAGCCACCACGCGCGAAGGTTTCCGCATCGCTCATGACATCAGCGCCTACAGCTTCGTGG CCCTGGCCAAGGCCGGTCGCGAAATGATGAAGGGCCGTAATGGCAGCCTGCTGACCCTGTCCTACCTGGGCGCAGAGCGCACCATGCCCAACTACAACGT
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| Amino Acid Sequence |
>ABC-type nickel/dipeptide/oligopeptide-type transport system, ATP-binding protein
MNNDNLIEIRDLAVEFVTGDSRQRVVENISFDIRRGETLALVGESGSGKSVTAHSILRLLPYPIASHPSGTIRYAGEDLLKVEEKKLRTIRGNRIAMIFQ EPMTSLNPLHSVEKQINEVLGLHKGLTGKAATERTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KQLQARLGMALLLISHDLNVVRQIANRVCVMQRGCIVEQASCEELFRSPQHPYTKVLLSAEPSGGPSTNPAGAPLLEIEDLKVWFPIKKGLLKRTVDHVK AVDGIRFSLPEGQTLGIVGESGSGKSTLGLAILRLIGSQGTIRFKGNALESLSQQQIRPLRRQMQVVFQDPFGSLSPRMSVSEIVGEGLRIHGMGTAAEQ QTAIIEALKEVGLDPDTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKQ GQVVEQGAAQDIFAAPQHPYTQQLLEAAFLAPVAVD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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