Pseudomonas syringae pv. syringae SM, PssSM_1613 (opdB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGGCTGGGCCGCAGACTTGGGCTGGCGAGCCTTGCGGCTGCGTTCGATCGGCCAGCGGATCAGCACGAACAGCAGATACGCAGCGAAGGCGAACATGC CATACATGGCCAGGTCCGACACGGCGGTCCAGATGTTGCTGCCGACCTTGAACATCAGGTCAAGCGCGGTGATCGCCACGGCTGGCGCCATCGCATCCTT GGCAGGGTCGACCATGGTCGGCGTAAACAGCAGCACCGCGACCGCCACCAGCAAAGGCTCCTTGAGATACCGCCACATCCAGCGGGTCATCAGAAACCAT ACCAGCAGGCAACCCAACGCGGCGAAGGCGTAGACGCTCCAGGCGATCAGATAGTCGTTTTCGGTCATGACGTCCGTGGTAAGCCAGGTAAAGAGGCGCT TATGATAACGGCTTTTGCCTGACGCGGCTTGCCTCGCTTCAGTATTCGGTTCAGCGTGTACCGATATTTTCCTGATTGATGCCTTAACAGAGAGCCCAGC
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| DNA Sequence for Gene |
>PssSM_1613
|opdB
ATGTCCTTCTCGAATGCAACCTCCAGCGCCCCGATCGCCCGCAAGGCCGACGGTCCCGACCCTTATGCCTGGCTGCAGAACCGCGACACCGACGAAGTGC TCGACTACCTCAAGGCCGAAAACGCCTGGCAGGAGCAGCAACTGGCAGAGCAGACCGGGTTGCGCGAAAGCCTGTTCGAGGAAATCAAGGGCCGCATCCT CGAAACCGACCTGTCGCTGCCCTCCCCCTGGGGGCCGTACCTTTATTACACCCGAACCACACAAGGCGACGAATACGCCCGTCACTACCGCTGCCCGCGC CCGGCCGACGACAGCAACACGGTGGATGAAAGCGCCGAGGAATTGTTGCTCGACCCTAACGAGATGGCCGATGGCGGCTTTTTCTCGCTGGGCGCGTTCA GCATCAGTCCTGACCACCAGCGTCTGGCCTACAGCCTGGACACCAGTGGCGACGAGGTGTACGAGCTTTACGTCAAGGAACTGAGCACCGGTCAGATCAG CAGCCTGCCCTTCGAAAACTGCGACGGCAGCATGACCTGGGCCAACGACAGCCAGACCCTGTTTTTCGGCGAGCTGGACGACACCCATCGCCCGGGCAAG CTGCATCGCCATACCCTGGGCACGGCATCGGCCGAGCAGGTGTTCGATGAGCCGGACGGCCGCTTCTTCCTGCACTGTTTCCGCAGCAGTTCCGAGCGCC AACTGATCATTCTGCTCAACAGCAAAACCACCAGCGAAGCCTGGGTGCTGGACGCCGATCATCCGCAACAGGCCTTCACCTGCCTCGCACCGCGCAGCGA AGGTCACGAATACTACCCGGACCACGGGCTGCTCGATGGCGTCTGGACCTGGTTCATCCGCAGCAATCAGAGCGGCATCAACTTCGCGCTGTATCACGCA GCGCAACACGCCAGTGGCGTACCGGTGCGCGAGGACTGGCAGACGCTGGTCGCGCACGACGACAAGGTCATGCTCGAAGGCGTCAGCCTCAACGCCAAAG GCATCAGCCTGAGCCTGCGCGAGGGCGGCCTGCCGATCATCGAAGTACGTCCTCAGGCGCTGCCGACCTATCGCGTGCAGCTGCCTGATGCCGCCTACAG CCTGTATGTGCAGGACACGCTGGAATTCGACAGCGACAAAATCCGCCTGCGCTACCAGTCGTTGAACCGGCCAGCCCAGGTCCGTCAACTGACCCTGGCC AGCGGCGAGCAGGTGGTGCTCAAGGAAACCCCGGTACTGGGCGCCTTCGACGCCGATGCCTACGTCAGCCAGCGTTTGTGGGCCACGGCCAGCGATGGCA CCCAAGTGCCGATCAGCCTGGTGGTCAAGCGCGAACTGGCCGGACAGGCCACCCCGCTGTATTTGTACGGCTACGGCGCCTATGGCGAGAGCCTCGACCC GTGGTTTTCCCACGCCCGTCTGAGCCTGCTCGACCGTGGCGTAGCGTTCGCCATTGCCCATGTGCGCGGCGGCGGCGAGCTGGGCGAGGCCTGGTATCGC AACGGCAAGCAGGAACACAAACAGAACACCTTCGGCGATTTCATTGCCTGCGCCGAACACCTTGTCGCCCAGGGTCTGACCAGCGCCGAACAGCTGGTGA TCAGCGGTGGCAGCGCCGGTGGCCTGCTGATCGGTGCAGTGCTCAACCAGCGGCCCGAGCTGTTCAAGGCAGCGATTGCCGAAGTGCCGTTCGTCGACGT GCTGAACACCATGCTCGACCCGGACCTGCCGCTGACCGTCACCGAATACGACGAATGGGGCAACCCGCAGGAGCCCGAGGTCTACGCGCGCATCAAGGCT TACGCGCCCTACGAAAACGTCACGGCCCAGGCCTACCCGGCCATGCTGGTCATCGCCGGTTACAACGACAGCCGCGTGCAGTATTGGGAAGCCGCCAAAT GGGTCGCGAAGTTGCGCGCCACCAAGACCGACGACAATCCATTGCTGCTCAAGACCGAACTGGGTGCCGGGCACGGTGGTATGAGCGGTCGCTATCAGGG CTTGCGTGACGTGGCGCTGGAGTACGCGTTTATCTTCAAGGTATTGCAGATCGCTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTTGGTGTGAAACACCTGTCTTACTAGGATCGGGGGCAGCGGAGTTGCCCCTTTGTCAGGATTACCAGACCTCACATGTCAGAACCACTGTCCAACCTG AACAACGCCATACGCGACATGCTGCTGGATTGCGGCCTGTTCGACACGCTGCTGCCGGGCGATTTCTTTACCGTAGCCGGCTATTTCAGCATTACCGATA TCGATAAGGGCGAGACTATTTTCGCCGAGGGCGATGCCGGAACCTTCATGTGCATCATCCATCAGGGCACCGTGTCAGTGCAGAAGCTTGCTGCAGACGG CCAACAGGTGGAAATCGCCGTTCTGCGGCGCGGACGCGCTTTCGGAGAAATGGCAGTGCTTGATGGTGAGCGCCGTTCGGCCAGTTGTATCGCTGCCACC AGTTGCCAGCTATTGAACCTGGGCCGTGATTCGCTGGACAAGATGCTCGAGGACGCGCCGAAAATCGCTGCCAAGATCATTCGCGCTCTGGCCATCTCGT
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| Amino Acid Sequence |
>Protease II
MSFSNATSSAPIARKADGPDPYAWLQNRDTDEVLDYLKAENAWQEQQLAEQTGLRESLFEEIKGRILETDLSLPSPWGPYLYYTRTTQGDEYARHYRCPR PADDSNTVDESAEELLLDPNEMADGGFFSLGAFSISPDHQRLAYSLDTSGDEVYELYVKELSTGQISSLPFENCDGSMTWANDSQTLFFGELDDTHRPGK LHRHTLGTASAEQVFDEPDGRFFLHCFRSSSERQLIILLNSKTTSEAWVLDADHPQQAFTCLAPRSEGHEYYPDHGLLDGVWTWFIRSNQSGINFALYHA AQHASGVPVREDWQTLVAHDDKVMLEGVSLNAKGISLSLREGGLPIIEVRPQALPTYRVQLPDAAYSLYVQDTLEFDSDKIRLRYQSLNRPAQVRQLTLA SGEQVVLKETPVLGAFDADAYVSQRLWATASDGTQVPISLVVKRELAGQATPLYLYGYGAYGESLDPWFSHARLSLLDRGVAFAIAHVRGGGELGEAWYR NGKQEHKQNTFGDFIACAEHLVAQGLTSAEQLVISGGSAGGLLIGAVLNQRPELFKAAIAEVPFVDVLNTMLDPDLPLTVTEYDEWGNPQEPEVYARIKA YAPYENVTAQAYPAMLVIAGYNDSRVQYWEAAKWVAKLRATKTDDNPLLLKTELGAGHGGMSGRYQGLRDVALEYAFIFKVLQIAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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