Pseudomonas syringae pv. syringae SM, PssSM_1229 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCCACGCGTTACCGTGAGCTTGCGCGCAACGTGCATCCGGATCGTTTTGCGGATGCCCCCGAGCGTGAGCAGCGTGTGGCGCTGGAGCGCTCGGCCA GTCTCAACGAGGCCTATCAGACCCTGAAAAGCCCGCCGAAAAGGGCGCGTTATCTGCTGGCAATGAACGGCAACGAAGTGCCGCTCGAAGTCACGGTGCA TGATCCCGAGTTTCTTCTGCAGCAGATGCAATTGCGCGAAGACCTCGAGGACTTGCAGGACGAGGCCGATCTGGCCGGCGTTGCGACCTTCAAGCGTCAG CTCAAGATCGCTCAGGACGAACTGAACCAGAGCTTCGCAGTCTGTTGGAATGATGCTGCACAACGCGAGCACGCTGAAAAGCTGATGCGGCGTATGCAGT TTCTCGACAAGCTCTCTCACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCCGCGCGGCTTCTGCCGCGCGCCAGTGATTATTCTGAACAGC
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| DNA Sequence for Gene |
>PssSM_1229
|hscA
ATGGCTTTACTGCAGATCGCCGAACCCGGCCTGAGTCCTCAACCGCACCAGCGTCGTCTGGCTGTGGGTATCGACCTGGGCACTACCAATTCTCTGGTCG CTGCAGTACGCAGCGGCCTGTCCGAACCGCTGGCCGATGCAGAGGGGCAGGTCATTCTGCCGTCTGCCGTGCGCTATCACGCTGATCGTGTCGAAGTAGG GCAGTCAGCGAAGATCGCCGCCTCCCAGGACCCGTTCAATACCGTTCTTTCGGTCAAGCGTCTCATGGGTCGTGGTCTGACCGACGTCAAGCAACTGGGC GAGCAGCTGCCGTACCGGTTCGTCGGCGGTGAGTCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGTCCTGTCGAAGTGTCTGCCGACATCC TCAAGGTTCTGCGCCAGCGCGCAGAAGCCTCTCTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTTCCTGCCTACTTCGATGATGCTCAGCGTCAGGC GACCAAGGACGCTGCCAGACTGGCGGGCCTCAATGTACTGCGGCTGCTCAATGAGCCCACGGCTGCGGCGGTCGCCTACGGCCTGGATCAAAAGGCCGAA GGCGTGGTTGCCATCTATGACCTGGGCGGCGGGACCTTCGACATCTCTATCCTGCGCCTGACCGGTGGTGTGTTTGAAGTACTGGCCACTGGCGGCGATA CCGCTCTGGGTGGCGATGACTTCGATCATGCGATAGCCAGCTGGATTGTTGCTGATGCCGGTCTGTCTGCCGATATCGACCCTTCTGCGCAACGCAGCCT GCTGCAGGCTGCCTGCTCGGCCAAGGAAGCGCTGACTGACGCCGAGTCTGTCGAGGTCGCCTACGGTGAGTGGCGTGGCACGCTGACGCGCGAGGCGCTC AATGCGCTGATCGAACCTATGATTGCGCGCAGCCTCAAGGCCTGTCGCCGAGCAGTACGTGATACCGGTATCGAGCTTGAAGAAGTCGAGGCGGTGGTTA TGGTCGGCGGTTCGACCCGTGTTCCACGAGTGCGCGAAGCGGTGGCCGAGCTGTTCGGTCGTCAGCCGTTGACCGAGATCGACCCGGATCAGGTGGTAGC CATCGGGGCTGCGATCCAGGCCGATACTCTGGCCGGCAACAAGCGTGACGGTGGCGAACTGCTGCTCCTCGATGTGATTCCGCTCTCGCTGGGGCTGGAA ACCATGGGCGGGCTGATGGAGAAGGTCATTCCGCGCAACACCACCATTCCTGTGGCGCGTGGTCAGGAATTCACCACGTACAAGGATGGCCAGACGGCCA TGAAGATTCATGTCCTGCAGGGCGAGCGTGAATTGATCAGCGACTGTCGTTCGCTGGCGCGCTTCGAACTGCGTGGCATCCCGCCGATGGTCGCGGGTGC GGCAAAGATTCGTGTCACCTTCCAGGTCGATGCAGACGGTTTGCTCAGCGTTTCGGCGCGTGAAATGGGCTCCGGTATTGAGTCGAGCATTCAGGTCAAG CCGTCCTACGGGCTGACCGATGACGAGGTCACTCGCATGCTCAAGGATTCCTTCGAGTATGCCGGCGACGACAAGGTCGCTCGTGTGCTGCGTGAGCATC AGGTTGATGCCGAGCGCCTGCTCGAAGCTGTTCAGGGTGCCCTGGACGCCGATGGCGAGCGTCTTCTCGACGAAGAAGAGCGCCTGGTTATCAACCTGCA GATGGACGAACTCCGTGAACTGATGCAAGGCACCGATGGTTATGCCATCGAGCAGCAGACCAAGCGTCTGTCGCAGGTGACCGATGCATTTGCTGCCCGA CGCCTCGATTCGACGGTAAAAGCCGCACTGGCCGGGCGCAACTTGAATGAGATTGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGGTGATTTTTCTGCCCCACGCCGAGCATTGCCCGGACGGGCTGGTTGTAGAAGTGGAGCCCGGCACGTCTATTCTCGACATTGCCCACG AGCACCACATCGAGATTGAAAGCGCCTGTGGGGGCGTGTGTGCGTGCACTACCTGCCATTGTGTCATTCGCGAAGGGTTCAATTCGCTGAATGAAGCCGA TGAGCTGGAAGAAGACATGCTCGACAAGGCGTGGGGGCTGGAGCCGCAGTCGCGTCTGTCCTGTCAGGCCATTGTCGGCAACGAAGACCTCACGGTCGAA ATACCCAAGTATTCGCTCAACCACGCCGCTGAAGCGCCGCACTGATTCAAGGATTGCTCATGAGTCTCAAATGGGTTGATGTGCAGGAAATCGCCATCCA GCTGGCTGAAAGCCACCCGGAAGTAAATCCGCTCACAGTGAGCTTCCCCAGGTTACGTGGTCTGGTCATGGCCTTGCCTGAATTCGATGACCATCCGGAC
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| Amino Acid Sequence |
>Fe-S protein assembly chaperone protein HscA
MALLQIAEPGLSPQPHQRRLAVGIDLGTTNSLVAAVRSGLSEPLADAEGQVILPSAVRYHADRVEVGQSAKIAASQDPFNTVLSVKRLMGRGLTDVKQLG EQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAEASLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDQKAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDTALGGDDFDHAIASWIVADAGLSADIDPSAQRSLLQAACSAKEALTDAESVEVAYGEWRGTLTREAL NALIEPMIARSLKACRRAVRDTGIELEEVEAVVMVGGSTRVPRVREAVAELFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARGQEFTTYKDGQTAMKIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSAREMGSGIESSIQVK PSYGLTDDEVTRMLKDSFEYAGDDKVARVLREHQVDAERLLEAVQGALDADGERLLDEEERLVINLQMDELRELMQGTDGYAIEQQTKRLSQVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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