Pseudomonas syringae pv. syringae SM, PssSM_0818 (mrcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCACCGTTGGCCTGCAGCGTGCTCAGCAGGCCATCCTGCGAGAACTGCTTCATCTTCAGCGCGTACTCGATGGTTTCGCCGTCGCCGCCCAGTTGTGG CGCGTCCTCTGTGCCAGTGATCGGCAGGACTTCGATGTAGAGGTCGTCGGTCAGACGCTGATTCAGGCGCAACTCTTCTTCGCAGAAATGCTTGCGCAGG GCCAGCGTGGTGAAATCCAGAAAGCCGAAGTTCATCGGCTTTTTGAATTTGTAGGCATACGGACCCGTCAGCAGCACCCAGGAAATGTGCGTTTCGATGA CCTGGAAACTCTCCACCGGATGCGGGAAGAGGGCAGGGTTCTGCAGGGCAGCAATCAAAGACTGGCTCACGGTCGATCCTTCAGGAATGTGTTCAAAATG TAAGTACACGATGCTGCCATTATGGCCGCTTGGCGCGAGGCTGCAAACCGCTGACTCGGGCGTCTGTCGATCCTCGGTAAAGTGCGTATAATCCGCGCCC
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| DNA Sequence for Gene |
>PssSM_0818
|mrcB
ATGACTCGATCCCGCACCTCTCGTTCTGCAAAAAAACAACCTCCCCGCAGCCTTAACAAGTGGCTGGGCTGGGCGTTGAAGCTCGGTATTGTCGGCCTGG TTCTGCTCGGCGGCCTGGCCATTTATCTCGATGCAATCGTCCAGGAAAAATTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTCTATGCACGGCCGCT GGAGCTGTTCGTCGGACAGAAGCTGAGCCGCGATGACTTTCTCATCGAACTGGACGCCTTGGGCTATCGCCGCGAAAGCGTGGCGAACGGCCCCGGTGCC GCAGCGGTGAACGGCAATACCGTCGACCTCAACACGCGTGGTTTTCAGTTCTACGAAGGCACTGACGCAGCGCAGCAGGTGCGCGTGCGCTTTTCCGGTG ACTACGTAGCTGACTTGTCTTCGGGCAATGGTGCAAAGCTTGCGGTGGCGCGGCTTGAGCCGTTGCTGATCGGCGGCTTGTACCCGAAGAACCTGGAAGA CCGGATTCTGATCAAGCTGGATCAGGCGCCGCCCTATCTGCTCGACGGGCTGGTAGCGGTCGAGGACCGGGATTTCTATCACCACTTCGGCGTGTCGCCC AAGTCCATTGCCCGGGCGATCTGGGTCAATACCTCGCAGGGGCAGATGCGCCAGGGCGGCAGTACGCTGACCCAGCAGTTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGCAAGCTGACCGAAGCCATGATGGCCGTTTTGCTGGAGATCCATTACAGCAAGCAGGAAATCCTCGAGGCCTATCTCAA CGAAGTGTTCGTCGGCCAGGACGGCCAGCGTGCTGTTCACGGTTTCGGTCTGGCCAGTCAGTATTTCTTCAGCCAGCCGCTGTCCGAACTGAAAATCCAT CAGGTGGCGATGCTGGTCGGTCTGGTCAAAGGGCCGTCCTTCTACAACCCGCGTCGTAATCCGGAGCGTGCTCTGGAGCGTCGCAATCTGGTGCTCGATC TGTTCGAGCAGCAGGGCGTCGCCACGCCGGAAGTGGTTGCCGCTGCGAAGAAAATGCCACTGGGTGTGACCAAGACCGGGACCCTCGCCGACAGCTCGTT CCCGGCGTTCCTCGATCTGGTCAAGCGTCAGCTGCGCGAAGACTATCGCGACGAAGACTTGACCGAAGAAGGGCTGCGGATCTTTACCAGTTTCGATCCG ATCCTGCAGATGAAGTCCCAGGCTGCCATGGACGATACGTTCAAGAAGCTCGCCGGGCGCAAGGGTTCTGATGAGGTGGAGTCGGCCATGGTCGTCACCA ACCCGGAAACCGGCGAAGTGCAGGCGTTGATCGGTGGGCGTGAGGCCGGGTTCTCGGGCTTCAACCGGGCGATCGACGCGGTTCGGCCGATCGGCTCGCT GGTCAAGCCGGCTATTTACCTGACGGCACTCGAACGGCCAAGCCAGTACACCTTGACCAGCTGGATCGCCGACGAACTGTTCCAGGTCAAGGGCGCCGAT GGCCAGATCTGGAAACCGCAGAACTACGATCACAAGTCACACGGCAATATCTTCCTGTATCAGGGGTTGGCGCATTCTTACAACCTGTCGACCGCCAAGT TGGGTCTTGAGCTGGGCATTCCAAACGTGTTTAAGACGCTGGCCAAGCTGGGTGTGACGCGCGAATGGCCGACCTATCCGTCGATGCTGCTGGGTGCGGG TGGCTTGAGTCCGATGGAAGTGGCCACCATGTATCAGACCATCGCCAGCGGCGGGTTCAATACGCCGATGCGTGGTATTCGCAGCGTGCTCACCGCTGAA GGCGAGCCGCTCAAGCGTTATCCGTTCCAGATTGAACAGCGCTTCGATCCGGGTGCCATATACCTGGTACAGAATGCGATGCAGCGGGTCATGCGCGAAG GTACAGGCAAATCTGTTTACAACGTGTTGCCGAGCTCGTTGAATCTGGCGGGCAAGACCGGCACCAGTAACGACTCGCGCGACAGCTGGTTTGCCGGGTT CAGTCAGGACCTGCTGGCCGTTGTGTGGATGGGTCGCGACGACAACGGCAAGACACCGTTTACCGGTGCCACCGGTGCCCTGCAGGTCTGGACCAGTTTC ATGCGCAAGGCCGGTCCGCTGCCGCTGGACATGGCGATGCCGGACAACGTCGTTCAGGCGTGGGTCGATGCGCAGACCGGTCAGGGTTCGGATGCAAGCT GCCCGAATGCCGTGCAGATGCCGTATATTCGCGGCAGTGAGCCCCAGCCTGGCGCGACATGCGGCGGCGCTCCGGCACCTGCCACTGAGGTGATGGACTG GGTCAAGGGTTGGTTGAACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAATCGAGGTTTTGAAGTGAATAAATGGTGGATTCCAGCTTTAACGGCACTGGCCTTGCTGAACGGCTGCGCCAGTGTGGAACGCGGCTCGATTCCGGT CGTGGATTCGAGCTCCAAGGTGTCCAATGGCGAACGAGCGGCAGCTTCGCGTCGCACCAACACCGCTCCGGTGCAACAGCAGCCGCAAGCTGTACCGCAG GACTCGGGCGTGGTGGTGATGGTACCGGGCGCGGGTGGCGCTGATGCAGGACAGAGTTACTCTGCGCCCGCCAGTCAGGCACCGTTCAGTGTCAACACTC CGCCTGTCGATGCCGCTCCTGTCAATCAGGCCCCGGTCAGTCAGGCTCCCGCGAACAACAGTTACAGCATGCCGGCCGCCTCTGCCCCGACCGGAATTCC GTCCAGCGGTGGCGGTCTGTCAGAGGACGAGCAACTTGACGGGCCTGTACTGGCATTGCTCACCACTGCACAGCAACAGCAGACCAGTGGCGATCTCAAC
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRSRTSRSAKKQPPRSLNKWLGWALKLGIVGLVLLGGLAIYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLSRDDFLIELDALGYRRESVANGPGA AAVNGNTVDLNTRGFQFYEGTDAAQQVRVRFSGDYVADLSSGNGAKLAVARLEPLLIGGLYPKNLEDRILIKLDQAPPYLLDGLVAVEDRDFYHHFGVSP KSIARAIWVNTSQGQMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAVLLEIHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQYFFSQPLSELKIH QVAMLVGLVKGPSFYNPRRNPERALERRNLVLDLFEQQGVATPEVVAAAKKMPLGVTKTGTLADSSFPAFLDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKSQAAMDDTFKKLAGRKGSDEVESAMVVTNPETGEVQALIGGREAGFSGFNRAIDAVRPIGSLVKPAIYLTALERPSQYTLTSWIADELFQVKGAD GQIWKPQNYDHKSHGNIFLYQGLAHSYNLSTAKLGLELGIPNVFKTLAKLGVTREWPTYPSMLLGAGGLSPMEVATMYQTIASGGFNTPMRGIRSVLTAE GEPLKRYPFQIEQRFDPGAIYLVQNAMQRVMREGTGKSVYNVLPSSLNLAGKTGTSNDSRDSWFAGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MRKAGPLPLDMAMPDNVVQAWVDAQTGQGSDASCPNAVQMPYIRGSEPQPGATCGGAPAPATEVMDWVKGWLN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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